Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb303610 Zea mays HOM05D007626 ORTHO05D009633 1.7e-103 379.4 206 100.0
Os07g0225100 Oryza sativa ssp. japonica HOM05D007626 ORTHO05D009633 2.8e-45 186.0 153 70.6
Ah.12g059720 Amaranthus hybridus HOM05D007626 ORTHO05D009633 1.2e-38 164.1 118 73.7
Prupe.7G001500 Prunus persica HOM05D007626 ORTHO05D009633 1.2e-38 164.1 131 67.2
Atru.BG.146.p Acer truncatum HOM05D007626 ORTHO05D009633 2.0e-38 163.3 118 75.4
MBI19_g24067_MAGBIO Magnolia biondii HOM05D007626 ORTHO05D009633 3.4e-38 162.5 166 59.0
GSVIVG01033375001 Vitis vinifera HOM05D007626 ORTHO05D009633 3.4e-38 162.5 114 78.1
AUR62039720 Chenopodium quinoa HOM05D007626 ORTHO05D009633 4.4e-38 162.2 118 74.6
FvH4_2g12801 Fragaria vesca HOM05D007626 ORTHO05D009633 7.5e-38 161.4 118 73.7
FAN24G1235 Fragaria x ananassa HOM05D007626 ORTHO05D009633 7.5e-38 161.4 151 62.9
FAN27G0900 Fragaria x ananassa HOM05D007626 ORTHO05D009633 1.3e-37 160.6 118 73.7
Duzib106G0740 Durio zibethinus HOM05D007626 ORTHO05D009633 1.7e-37 160.2 134 65.7
CiPaw.09G000400 Carya illinoinensis HOM05D007626 ORTHO05D009633 2.2e-37 159.8 135 65.9
Thecc.05G258800 Theobroma cacao HOM05D007626 ORTHO05D009633 2.2e-37 159.8 115 74.8
TWI60G0184 Tripterygium wilfordii HOM05D007626 ORTHO05D009633 2.8e-37 159.5 126 69.0
EL10Ac5g11761 Beta vulgaris HOM05D007626 ORTHO05D009633 3.7e-37 159.1 117 72.6
AUR62036270 Chenopodium quinoa HOM05D007626 ORTHO05D009633 3.7e-37 159.1 138 63.8
Atru.chr2.1268 Acer truncatum HOM05D007626 ORTHO05D009633 8.3e-37 157.9 116 73.3
Cfa016427 Carpinus fangiana HOM05D007626 ORTHO05D009633 8.3e-37 157.9 115 74.8
Manes.09G143600 Manihot esculenta HOM05D007626 ORTHO05D009633 8.3e-37 157.9 115 74.8
Hma1.2p1_0183F.1_g081040 Hydrangea macrophylla HOM05D007626 ORTHO05D009633 1.1e-36 157.5 118 70.3
TAR369G1032 Trochodendron aralioides HOM05D007626 ORTHO05D009633 1.1e-36 157.5 198 51.5
Gohir.A11G240300 Gossypium hirsutum HOM05D007626 ORTHO05D009633 1.4e-36 157.1 114 73.7
Potri.019G031800 Populus trichocarpa HOM05D007626 ORTHO05D009633 1.4e-36 157.1 115 74.8
COL.COLO4_08628 Corchorus olitorius HOM05D007626 ORTHO05D009633 1.8e-36 156.8 115 73.0
Haze_19399 Corylus avellana HOM05D007626 ORTHO05D009633 1.8e-36 156.8 115 74.8
Rhsim04G0085500 Rhododendron simsii HOM05D007626 ORTHO05D009633 2.4e-36 156.4 117 71.8
Sabra19G0040500 Salix brachista HOM05D007626 ORTHO05D009633 2.4e-36 156.4 115 74.8
Sopen10g029130 Solanum pennellii HOM05D007626 ORTHO05D009633 2.4e-36 156.4 118 68.6
Nitab4.5_0006279g0010 Nicotiana tabacum HOM05D007626 ORTHO05D009633 3.1e-36 156.0 117 68.4
FAN15G3689 Fragaria x ananassa HOM05D007626 ORTHO05D009633 4.1e-36 155.6 149 61.1
THA.LOC104801058 Tarenaya hassleriana HOM05D007626 ORTHO05D009633 5.4e-36 155.2 118 71.2
AT2G33260 Arabidopsis thaliana HOM05D007626 ORTHO05D009633 7.0e-36 154.8 138 63.0
Solyc10g078470.2 Solanum lycopersicum HOM05D007626 ORTHO05D009633 7.0e-36 154.8 118 66.9
PGSC0003DMG400008360 Solanum tuberosum HOM05D007626 ORTHO05D009633 7.0e-36 154.8 118 66.9
ATR0022G037 Amborella trichopoda HOM05D007626 ORTHO05D009633 9.1e-36 154.5 116 71.6
CARHR127270 Cardamine hirsuta HOM05D007626 ORTHO05D009633 9.1e-36 154.5 120 70.0
Thhalv10017973m.g Eutrema salsugineum HOM05D007626 ORTHO05D009633 9.1e-36 154.5 117 71.8
Gohir.D11G249701 Gossypium hirsutum HOM05D007626 ORTHO05D009633 9.1e-36 154.5 114 72.8
Gorai.007G267500 Gossypium raimondii HOM05D007626 ORTHO05D009633 9.1e-36 154.5 114 72.8
AL4G28900 Arabidopsis lyrata HOM05D007626 ORTHO05D009633 1.2e-35 154.1 117 71.8
Nitab4.5_0000812g0110 Nicotiana tabacum HOM05D007626 ORTHO05D009633 1.2e-35 154.1 117 67.5
DCAR_019892 Daucus carota HOM05D007626 ORTHO05D009633 2.0e-35 153.3 118 69.5
DCAR_019894 Daucus carota HOM05D007626 ORTHO05D009633 2.0e-35 153.3 118 69.5
PSO541G2066 Papaver somniferum HOM05D007626 ORTHO05D009633 2.0e-35 153.3 115 71.3
A05p12260 Brassica napus HOM05D007626 ORTHO05D009633 3.5e-35 152.5 114 72.8
Carub.0004s1473 Capsella rubella HOM05D007626 ORTHO05D009633 3.5e-35 152.5 120 69.2
BraA05t20167Z Brassica rapa HOM05D007626 ORTHO05D009633 4.5e-35 152.1 114 71.9
Cpa.g.sc59.30 Carica papaya HOM05D007626 ORTHO05D009633 5.9e-35 151.8 115 70.4
Sp4g15570 Schrenkiella parvula HOM05D007626 ORTHO05D009633 5.9e-35 151.8 117 70.9
Lalb_Chr06g0173891 Lupinus albus HOM05D007626 ORTHO05D009633 7.7e-35 151.4 124 66.1
BcaB02g10540 Brassica carinata HOM05D007626 ORTHO05D009633 1.0e-34 151.0 117 70.9
BcaC02g11413 Brassica carinata HOM05D007626 ORTHO05D009633 1.0e-34 151.0 117 70.9
BcaC02g11414 Brassica carinata HOM05D007626 ORTHO05D009633 1.0e-34 151.0 114 71.9
C04p15840 Brassica napus HOM05D007626 ORTHO05D009633 1.0e-34 151.0 114 71.9
BolC4t23153H Brassica oleracea HOM05D007626 ORTHO05D009633 1.0e-34 151.0 114 71.9
HPP92_019029 Vanilla planifolia HOM05D007626 ORTHO05D009633 2.3e-34 149.8 114 71.9
PGR142G2321 Punica granatum HOM05D007626 ORTHO05D009633 2.9e-34 149.4 137 59.9
Medtr6g032995 Medicago truncatula HOM05D007626 ORTHO05D009633 3.8e-34 149.1 118 68.6
DCAR_019893 Daucus carota HOM05D007626 ORTHO05D009633 5.0e-34 148.7 118 66.9
DCAR_019895 Daucus carota HOM05D007626 ORTHO05D009633 5.0e-34 148.7 118 66.9
TPR.G6093 Trifolium pratense HOM05D007626 ORTHO05D009633 5.0e-34 148.7 118 67.8
Peaxi162Scf00003g00489 Petunia axillaris HOM05D007626 ORTHO05D009633 6.5e-34 148.3 124 63.7
Glyma.02G070800 Glycine max HOM05D007626 ORTHO05D009633 8.6e-34 147.9 115 67.8
Phvul.004G076800 Phaseolus vulgaris HOM05D007626 ORTHO05D009633 1.5e-33 147.1 124 65.3
Psat1g091200 Pisum sativum HOM05D007626 ORTHO05D009633 2.5e-33 146.4 114 68.4
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 3.3e-33 146.0 118 64.4
Hund10821 Selenicereus undatus HOM05D007626 ORTHO05D009633 5.5e-33 145.2 200 50.5
Lj2g0026043 Lotus japonicus HOM05D007626 ORTHO05D009633 2.1e-32 143.3 131 61.1
Aqoxy2G00014 Aquilegia oxysepala HOM05D007626 ORTHO05D009633 1.4e-31 140.6 137 56.2
CDE04G2338 Ceratophyllum demersum HOM05D007626 ORTHO05D009633 3.0e-31 139.4 118 63.6
Ciclev10020243m.g Citrus clementina HOM05D007626 ORTHO05D009633 3.7e-29 132.5 96 75.0
SEGI_02397 Sequoiadendron giganteum HOM05D007626 ORTHO05D009633 4.1e-28 129.0 139 54.7
Eucgr.K01473 Eucalyptus grandis HOM05D007626 ORTHO05D009633 5.4e-28 128.6 96 74.0
SEGI_16239 Sequoiadendron giganteum HOM05D007626 ORTHO05D009633 5.4e-28 128.6 128 58.6
SEGI_12738 Sequoiadendron giganteum HOM05D007626 ORTHO05D009633 1.6e-27 127.1 119 59.7
Pp3c10_5160 Physcomitrium patens HOM05D007626 ORTHO05D009633 2.3e-26 123.2 133 54.9
Glyma.16G152166 Glycine max HOM05D007626 ORTHO05D009633 5.6e-25 118.6 112 58.9
Mapoly0013s0120 Marchantia polymorpha HOM05D007626 ORTHO05D009633 7.3e-25 118.2 131 51.9
AagrBONN_evm.TU.Sc2ySwM_368.520 Anthoceros agrestis HOM05D007626 ORTHO05D009633 1.6e-24 117.1 112 55.4
Lj2P356T34 Lonicera japonica HOM05D007626 ORTHO05D009633 3.6e-24 115.9 96 67.7
VMungo0464G0964 Vigna mungo HOM05D007626 ORTHO05D009633 8.0e-24 114.8 103 63.1
Aa31LG5G4160 Aethionema arabicum HOM05D007626 ORTHO05D009633 2.3e-23 113.2 116 58.6
SEGI_04120 Sequoiadendron giganteum HOM05D007626 ORTHO05D009633 9.2e-20 101.3 116 51.7
PSO675G9388 Papaver somniferum HOM05D007626 ORTHO05D009633 1.2e-19 100.9 88 63.6
Actinidia38623 Actinidia chinensis HOM05D007626 ORTHO05D009633 2.1e-16 90.1 97 55.7
CAN.G1515.3 Capsicum annuum HOM05D007626 ORTHO05D009633 5.8e-14 82.0 118 45.8
Solyc12g027810.1 Solanum lycopersicum HOM05D007626 ORTHO05D009633 9.2e-12 74.7 88 50.0
QL07p020642 Quercus lobata HOM05D007626 ORTHO05D009633 1.9e-09 67.0 87 50.6
SalBow3G0063 Salvia bowleyana HOM05D003587 ORTHO05D004139 3.3e-09 66.2 135 33.3
Aqoxy3G02282_Aqoxy3G02283 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 1.2e-08 64.3 133 29.3
PSO339G3050 Papaver somniferum HOM05D003587 ORTHO05D004139 1.2e-08 64.3 132 33.3
PSO384G5085 Papaver somniferum HOM05D003587 ORTHO05D004139 3.6e-08 62.8 132 31.8
Solyc07g032290.3 Solanum lycopersicum HOM05D007626 ORTHO05D009633 3.6e-08 62.8 87 47.1
CAN.G640.2 Capsicum annuum HOM05D007626 ORTHO05D009633 4.7e-08 62.4 58 56.9
Hma1.2p1_1004F.1_g246830 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 4.7e-08 62.4 133 30.1
Actinidia38276 Actinidia chinensis HOM05D003587 ORTHO05D004139 1.1e-07 61.2 151 27.8
PRCOL_00003076 Prasinoderma coloniale HOM05D003587 ORTHO05D004139 1.1e-07 61.2 110 34.5
SEGI_26742 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 2.3e-07 60.1 113 33.6
SEGI_29926 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 2.3e-07 60.1 113 33.6
CAN.G665.3 Capsicum annuum HOM05D000062 ORTHO05D009633 3.1e-07 59.7 58 56.9
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 4.0e-07 59.3 102 38.2
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 4.0e-07 59.3 115 37.4
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 4.0e-07 59.3 115 37.4
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 4.0e-07 59.3 109 33.9
GSVIVG01016284001 Vitis vinifera HOM05D003587 ORTHO05D004139 4.0e-07 59.3 151 25.8
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 5.2e-07 58.9 115 36.5
Glyma.16G154700 Glycine max HOM05D003587 ORTHO05D004139 6.8e-07 58.5 124 30.6
Pp3c8_8340 Physcomitrium patens HOM05D003587 ORTHO05D004139 6.8e-07 58.5 135 33.3
Potri.010G221900 Populus trichocarpa HOM05D003587 ORTHO05D004139 6.8e-07 58.5 156 27.6
TAR633G2007 Trochodendron aralioides HOM05D003587 ORTHO05D004139 6.8e-07 58.5 145 26.9
CDE05G3302 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 8.9e-07 58.2 136 33.8
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 8.9e-07 58.2 102 37.3
FAN10G4213 Fragaria x ananassa HOM05D003587 ORTHO05D004139 8.9e-07 58.2 156 26.9
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 8.9e-07 58.2 115 36.5
ATR0115G029 Amborella trichopoda HOM05D003587 ORTHO05D004139 1.2e-06 57.8 133 28.6
arahy.Tifrunner.gnm1.ann1.TJZR4S Arachis hypogaea HOM05D003587 ORTHO05D004139 1.2e-06 57.8 125 30.4
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 1.2e-06 57.8 106 34.9
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 1.2e-06 57.8 115 36.5
Thecc.10G072900 Theobroma cacao HOM05D003587 ORTHO05D004139 1.2e-06 57.8 132 28.8
Peaxi162Scf00809g00432 Petunia axillaris HOM05D003587 ORTHO05D004139 1.5e-06 57.4 152 27.6
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 1.5e-06 57.4 106 34.9
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 1.5e-06 57.4 106 34.9
Solyc04g049340.3 Solanum lycopersicum HOM05D003587 ORTHO05D004139 1.5e-06 57.4 122 30.3
Lalb_Chr19g0129681 Lupinus albus HOM05D003587 ORTHO05D004139 2.0e-06 57.0 123 29.3
Nn2g10780 Nelumbo nucifera HOM05D003587 ORTHO05D004139 2.0e-06 57.0 126 33.3
VMungo0464G0799 Vigna mungo HOM05D003587 ORTHO05D004139 2.0e-06 57.0 124 31.5
Zm00001eb147020 Zea mays HOM05D007626 ORTHO05D442131 2.6e-06 56.6 159 35.2
arahy.Tifrunner.gnm1.ann1.3IGY6I Arachis hypogaea HOM05D003587 ORTHO05D004139 3.4e-06 56.2 120 30.8
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 3.4e-06 56.2 109 35.8
Dinv11778 Davidia involucrata HOM05D003587 ORTHO05D004139 3.4e-06 56.2 120 30.0
FAN10G2586 Fragaria x ananassa HOM05D003587 ORTHO05D004139 3.4e-06 56.2 162 27.8
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 3.4e-06 56.2 109 38.5
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 3.4e-06 56.2 115 35.7
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 3.4e-06 56.2 102 36.3
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 4.4e-06 55.8 105 36.2
MSTRG.8154 Avicennia marina HOM05D003587 ORTHO05D004139 4.4e-06 55.8 122 30.3
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 4.4e-06 55.8 115 34.8
vmacro07076 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 4.4e-06 55.8 125 30.4
arahy.Tifrunner.gnm1.ann1.Y38JVD Arachis hypogaea HOM05D003587 ORTHO05D004139 5.8e-06 55.5 102 35.3
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 5.8e-06 55.5 102 37.3
ECA238G1416 Erigeron canadensis HOM05D003587 ORTHO05D004139 5.8e-06 55.5 145 26.9
Manes.10G045400 Manihot esculenta HOM05D003587 ORTHO05D004139 5.8e-06 55.5 152 26.3
Oeu025946.1 Olea europaea HOM05D003587 ORTHO05D004139 5.8e-06 55.5 117 34.2
RcHm_v2.0_Chr1g0363461 Rosa chinensis HOM05D003587 ORTHO05D004139 5.8e-06 55.5 135 28.1
TWI15G0175 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 5.8e-06 55.5 135 28.1
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 7.5e-06 55.1 102 36.3
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 7.5e-06 55.1 115 33.0
QL08p056026 Quercus lobata HOM05D003587 ORTHO05D004139 7.5e-06 55.1 122 28.7
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 7.5e-06 55.1 115 35.7
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 9.9e-06 54.7 111 34.2
Lj5g0014900 Lotus japonicus HOM05D003587 ORTHO05D004139 9.9e-06 54.7 122 30.3
PGR142G0620 Punica granatum HOM05D003587 ORTHO05D004139 9.9e-06 54.7 123 30.1
Sabra10G0171700 Salix brachista HOM05D003587 ORTHO05D004139 9.9e-06 54.7 124 27.4
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 9.9e-06 54.7 112 35.7
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 9.9e-06 54.7 166 28.3


User provided reference genes

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