Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 2.1e-56 222.2 119 100.0
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 8.2e-13 77.4 41 90.2
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 9.1e-12 73.9 42 85.7
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 1.5e-11 73.2 41 85.4
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 1.3e-10 70.1 41 80.5
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 2.2e-10 69.3 39 84.6
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 5.0e-10 68.2 40 82.5
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 1.4e-09 66.6 40 75.0
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 1.4e-09 66.6 39 79.5
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.4e-09 66.6 40 77.5
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.4e-09 66.6 40 77.5
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 1.4e-09 66.6 52 65.4
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.9e-09 66.2 42 76.2
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.9e-09 66.2 42 76.2
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 2.5e-09 65.9 39 79.5
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 2.5e-09 65.9 38 81.6
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 2.5e-09 65.9 39 79.5
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 3.2e-09 65.5 39 76.9
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 3.2e-09 65.5 38 81.6
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 3.2e-09 65.5 38 81.6
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 3.2e-09 65.5 40 77.5
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 7.2e-09 64.3 39 74.4
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 7.2e-09 64.3 39 74.4
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 7.2e-09 64.3 39 74.4
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 7.2e-09 64.3 48 66.7
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 7.2e-09 64.3 40 75.0
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 9.4e-09 63.9 38 78.9
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 9.4e-09 63.9 40 75.0
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 9.4e-09 63.9 39 74.4
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 9.4e-09 63.9 40 70.0
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 1.6e-08 63.2 38 78.9
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 1.6e-08 63.2 47 59.6
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 2.1e-08 62.8 39 74.4
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 2.1e-08 62.8 39 71.8
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 2.1e-08 62.8 37 78.4
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 2.7e-08 62.4 40 75.0
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 2.7e-08 62.4 39 71.8
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 3.6e-08 62.0 38 73.7
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 3.6e-08 62.0 39 74.4
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 3.6e-08 62.0 38 76.3
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 4.7e-08 61.6 38 73.7
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 4.7e-08 61.6 39 71.8
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 4.7e-08 61.6 39 71.8
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 4.7e-08 61.6 39 71.8
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 4.7e-08 61.6 39 71.8
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 6.1e-08 61.2 38 73.7
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 6.1e-08 61.2 39 71.8
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 6.1e-08 61.2 39 71.8
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 6.1e-08 61.2 39 71.8
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 6.1e-08 61.2 39 71.8
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 6.1e-08 61.2 39 71.8
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 7.9e-08 60.8 40 67.5
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 1.0e-07 60.5 39 69.2
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.0e-07 60.5 38 71.1
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 1.0e-07 60.5 40 70.0
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 1.0e-07 60.5 39 69.2
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 1.4e-07 60.1 39 69.2
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 1.4e-07 60.1 38 71.1
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 1.8e-07 59.7 39 66.7
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 1.8e-07 59.7 39 69.2
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 1.8e-07 59.7 39 69.2
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 1.8e-07 59.7 38 71.1
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 1.8e-07 59.7 40 70.0
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 2.3e-07 59.3 39 66.7
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 3.0e-07 58.9 39 66.7
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 3.9e-07 58.5 38 71.1
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 3.9e-07 58.5 38 71.1
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 6.7e-07 57.8 39 66.7
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 6.7e-07 57.8 39 64.1
Zm00001eb411010 Zea mays HOM05D007939 ORTHO05D010027 6.7e-07 57.8 29 93.1
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 8.8e-07 57.4 52 59.6
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 1.5e-06 56.6 39 61.5


User provided reference genes

Program Settings