Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb301880 Zea mays HOM05D009359 ORTHO05D011905 1.5e-247 859.0 408 100.0
Zm00001eb301810 Zea mays HOM05D009359 ORTHO05D011905 4.4e-183 644.8 409 76.3
Zm00001eb301860 Zea mays HOM05D009359 ORTHO05D011905 4.9e-182 641.3 411 76.6
Zm00001eb301850 Zea mays HOM05D009359 ORTHO05D011905 4.1e-181 638.3 408 76.5
Zm00001eb301790 Zea mays HOM05D009359 ORTHO05D011905 2.1e-180 636.0 409 75.6
Zm00001eb301870 Zea mays HOM05D009359 ORTHO05D011905 3.9e-179 631.7 409 75.1
Zm00001eb301840 Zea mays HOM05D009359 ORTHO05D011905 1.6e-177 626.3 409 75.1
Os07g0535100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 2.9e-57 226.9 404 38.1
Os07g0535200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 7.1e-56 222.2 404 37.6
Zm00001eb115740 Zea mays HOM05D009359 ORTHO05D000491 6.6e-46 189.1 413 32.4
Zm00001eb302230 Zea mays HOM05D009359 ORTHO05D011905 1.1e-45 188.3 443 31.8
Zm00001eb116720 Zea mays HOM05D009359 ORTHO05D000491 1.9e-45 187.6 413 32.7
Zm00001eb116670 Zea mays HOM05D009359 ORTHO05D000491 2.1e-44 184.1 413 32.0
Os05g0172500 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 4.8e-44 183.0 406 34.7
Os05g0177100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 4.8e-44 183.0 415 33.5
Zm00001eb302240 Zea mays HOM05D009359 ORTHO05D011905 4.0e-43 179.9 341 35.5
Os07g0535700 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.5e-42 177.9 375 36.5
Os05g0177400 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 2.0e-42 177.6 410 32.4
Os07g0535600 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.1e-40 171.8 343 36.7
Os05g0139200 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D000491 9.6e-37 158.7 417 30.7
Os05g0177000 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.3e-36 158.3 434 31.3
Os05g0139300 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 5.3e-27 126.3 412 28.2
Os05g0172100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 2.7e-23 114.0 351 30.2
Os10g0559550 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 1.5e-21 108.2 231 32.9
Zm00001eb257180 Zea mays HOM05D009359 ORTHO05D011905 1.6e-20 104.8 131 47.3
Os01g0380800 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.2e-16 90.5 389 22.9
Os05g0175800 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 7.9e-15 85.9 219 32.9
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.3e-14 85.1 329 27.7
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.7e-14 82.4 333 27.0
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.7e-14 82.4 406 26.4
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.5e-13 81.6 403 26.8
Hund15878 Selenicereus undatus HOM05D001729 ORTHO05D001155 4.3e-13 80.1 394 24.6
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 5.7e-13 79.7 374 24.9
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 7.4e-13 79.3 403 25.6
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 9.7e-13 79.0 343 26.5
MBI05_g44031_MAGBIO Magnolia biondii HOM05D016110 ORTHO05D000491 1.6e-12 78.2 323 24.8
Os01g0379400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 1.6e-12 78.2 428 23.4
Lj2A1107G68 Lonicera japonica HOM05D001729 ORTHO05D001155 2.2e-12 77.8 432 23.4
Os08g0529400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D010075 2.2e-12 77.8 388 26.8
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 3.7e-12 77.0 327 26.9
vmacro06138 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 4.8e-12 76.6 376 25.3
Zm00001eb036470 Zea mays HOM05D009359 ORTHO05D012866 1.1e-11 75.5 403 24.3
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.4e-11 75.1 410 25.9
Gohir.D07G047500 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.8e-11 74.7 338 22.8
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 6.9e-11 72.8 407 25.6
QL11p003889 Quercus lobata HOM05D000007 ORTHO05D000039 6.9e-11 72.8 421 23.0
EL10As6g23638 Beta vulgaris HOM05D000007 ORTHO05D000017 1.5e-10 71.6 378 25.1
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 1.5e-10 71.6 425 24.9
Os05g0172400 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 3.4e-10 70.5 116 40.5
Rhsim08G0219900 Rhododendron simsii HOM05D001729 ORTHO05D001155 3.4e-10 70.5 420 23.6
Gorai.001G050600 Gossypium raimondii HOM05D000664 ORTHO05D000491 4.5e-10 70.1 335 23.3
Lj5C336G7 Lonicera japonica HOM05D007560 ORTHO05D005947 4.5e-10 70.1 346 21.7
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 4.5e-10 70.1 456 21.7
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 5.9e-10 69.7 394 22.8
PGSC0003DMG400009874 Solanum tuberosum HOM05D008706 ORTHO05D010440 5.9e-10 69.7 212 26.4
PGSC0003DMG400021673 Solanum tuberosum HOM05D000007 ORTHO05D000039 7.7e-10 69.3 407 22.1
Prupe.1G146800 Prunus persica HOM05D000007 ORTHO05D000521 1.0e-09 68.9 294 26.5
AUR62012552 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.2e-09 67.8 371 26.7
Lj8C46T5 Lonicera japonica HOM05D000664 ORTHO05D000491 2.2e-09 67.8 293 27.0
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 2.2e-09 67.8 366 22.1
QL12p021856 Quercus lobata HOM05D000007 ORTHO05D000039 2.9e-09 67.4 398 22.1
Hma1.2p1_1404F.1_g281360 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 3.8e-09 67.0 198 28.8
QL11p003899 Quercus lobata HOM05D000007 ORTHO05D000039 8.5e-09 65.9 413 22.8
Atru.chr1.870 Acer truncatum HOM05D000664 ORTHO05D000491 3.2e-08 63.9 395 22.8
Nn1g03296 Nelumbo nucifera HOM05D000007 ORTHO05D003666 3.2e-08 63.9 393 22.6
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 3.2e-08 63.9 417 24.5
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 3.2e-08 63.9 295 25.1
COL.COLO4_37363 Corchorus olitorius HOM05D000664 ORTHO05D000491 4.2e-08 63.5 202 28.7
Rhsim03G0248900 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.5e-08 63.2 211 27.5
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 5.5e-08 63.2 432 23.1
ClCG01G004670 Citrullus lanatus HOM05D000664 ORTHO05D000491 7.2e-08 62.8 401 22.4
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 7.2e-08 62.8 426 21.4
Migut.J01313 Erythranthe guttata HOM05D000007 ORTHO05D000017 7.2e-08 62.8 386 23.3
Prupe.3G191300 Prunus persica HOM05D000007 ORTHO05D000017 7.2e-08 62.8 389 21.9
vmacro06136 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 7.2e-08 62.8 183 27.9
Cc01_g02550 Coffea canephora HOM05D000664 ORTHO05D000491 9.4e-08 62.4 211 26.1
Prupe.1G167600 Prunus persica HOM05D000007 ORTHO05D000017 1.2e-07 62.0 149 32.9
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 1.2e-07 62.0 405 24.9
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 1.2e-07 62.0 222 30.6
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.6e-07 61.6 363 22.9
AL6G17920 Arabidopsis lyrata HOM05D000664 ORTHO05D000491 1.6e-07 61.6 391 22.0
Manes.09G122100 Manihot esculenta HOM05D000007 ORTHO05D000039 1.6e-07 61.6 384 21.1
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.6e-07 61.6 417 24.5
MSTRG.27218 Avicennia marina HOM05D000664 ORTHO05D000491 2.1e-07 61.2 299 26.8
Migut.F01254 Erythranthe guttata HOM05D000664 ORTHO05D000491 2.1e-07 61.2 136 34.6
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.1e-07 61.2 432 23.6
Cc00_g01300 Coffea canephora HOM05D000007 ORTHO05D000017 2.7e-07 60.8 323 24.5
PSO424G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.7e-07 60.8 404 22.5
PSO542G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.7e-07 60.8 404 22.5
PSO593G0001 Papaver somniferum HOM05D000664 ORTHO05D000491 2.7e-07 60.8 404 22.5
Thecc.05G282400 Theobroma cacao HOM05D000664 ORTHO05D000491 2.7e-07 60.8 280 25.7
Aqoxy4G02867 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 3.6e-07 60.5 403 22.3
CANSAT01G0762 Cannabis sativa HOM05D011629 ORTHO05D013267 3.6e-07 60.5 212 27.8
CANSAT01G1414 Cannabis sativa HOM05D011629 ORTHO05D013267 3.6e-07 60.5 212 27.8
CiPaw.01G207700 Carya illinoinensis HOM05D000664 ORTHO05D000491 3.6e-07 60.5 203 27.6
Lj8C356T1 Lonicera japonica HOM05D007560 ORTHO05D005947 3.6e-07 60.5 418 20.8
MD04G1021100 Malus domestica HOM05D000007 ORTHO05D000521 3.6e-07 60.5 137 36.5
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 3.6e-07 60.5 207 26.6
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 3.6e-07 60.5 361 24.9
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 4.6e-07 60.1 422 23.0
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 4.6e-07 60.1 199 31.2
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 4.6e-07 60.1 404 22.8
Aqoxy6G00426 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 6.1e-07 59.7 139 34.5
Lj2A946T25 Lonicera japonica HOM05D001729 ORTHO05D001155 6.1e-07 59.7 411 22.4
Lj5g0022192 Lotus japonicus HOM05D000664 ORTHO05D000491 6.1e-07 59.7 216 27.8
PSO601G0014 Papaver somniferum HOM05D000664 ORTHO05D000491 6.1e-07 59.7 394 22.8
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 7.9e-07 59.3 197 28.9
DCAR_018081 Daucus carota HOM05D000664 ORTHO05D000491 7.9e-07 59.3 198 27.3
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 7.9e-07 59.3 214 27.6
Duzib211G0499 Durio zibethinus HOM05D000007 ORTHO05D000521 7.9e-07 59.3 340 22.9
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 7.9e-07 59.3 319 25.4
Cpa.g.sc42.22 Carica papaya HOM05D002420 ORTHO05D002422 1.0e-06 58.9 336 24.7
MBI19_g26733_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 1.0e-06 58.9 343 22.7
QL12p021811 Quercus lobata HOM05D000007 ORTHO05D000039 1.0e-06 58.9 405 20.7
Dinv01172 Davidia involucrata HOM05D000007 ORTHO05D000039 1.4e-06 58.5 139 32.4
Dinv01173 Davidia involucrata HOM05D000007 ORTHO05D000039 1.4e-06 58.5 139 32.4
Dinv16557 Davidia involucrata HOM05D000007 ORTHO05D009073 1.4e-06 58.5 336 24.7
QL03p005922 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-06 58.5 432 22.2
QL04p064442 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-06 58.5 432 22.2
PGSC0003DMG400009944 Solanum tuberosum HOM05D008706 ORTHO05D010440 1.4e-06 58.5 214 25.2
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 1.8e-06 58.2 205 28.3
Prupe.1G170100 Prunus persica HOM05D000007 ORTHO05D000521 1.8e-06 58.2 135 34.1
QL08p033970 Quercus lobata HOM05D000007 ORTHO05D003666 1.8e-06 58.2 398 22.9
TPR.G40220 Trifolium pratense HOM05D000007 ORTHO05D000017 1.8e-06 58.2 132 32.6
Peaxi162Scf00469g00073 Petunia axillaris HOM05D000007 ORTHO05D000039 2.3e-06 57.8 450 22.9
Aqoxy6G00425 Aquilegia oxysepala HOM05D000664 ORTHO05D010440 3.0e-06 57.4 396 21.5
AT5G07610 Arabidopsis thaliana HOM05D000664 ORTHO05D000491 3.0e-06 57.4 342 21.9
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 3.0e-06 57.4 354 22.9
Manes.07G039200 Manihot esculenta HOM05D000007 ORTHO05D000039 3.0e-06 57.4 144 31.2
TAR626G1309 Trochodendron aralioides HOM05D000664 ORTHO05D000491 3.0e-06 57.4 202 26.7
COL.COLO4_37361 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.9e-06 57.0 203 26.1
FAN14G3348 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.9e-06 57.0 241 26.6
Gohir.A12G196800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.9e-06 57.0 203 26.6
MD04G1162000 Malus domestica HOM05D000007 ORTHO05D000017 3.9e-06 57.0 383 24.0
Prupe.1G066200 Prunus persica HOM05D000664 ORTHO05D000491 3.9e-06 57.0 213 23.0
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 3.9e-06 57.0 301 22.6
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-06 57.0 345 23.2
SGA_v2.0_scaffold136G35012 Striga asiatica HOM05D000664 ORTHO05D000491 3.9e-06 57.0 143 30.1
Aqoxy2G01152 Aquilegia oxysepala HOM05D000664 ORTHO05D000491 5.1e-06 56.6 213 28.6
BraA03t09690Z Brassica rapa HOM05D000664 ORTHO05D000491 5.1e-06 56.6 424 21.9
Gohir.D11G157800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 5.1e-06 56.6 131 30.5
QL05p054335 Quercus lobata HOM05D000007 ORTHO05D003666 5.1e-06 56.6 388 22.7
Rhsim11G0068900 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.1e-06 56.6 201 27.4
Carub.0006s0659 Capsella rubella HOM05D000664 ORTHO05D000491 6.7e-06 56.2 216 25.5
Gohir.A11G151100 Gossypium hirsutum HOM05D000007 ORTHO05D000521 6.7e-06 56.2 131 29.8
Gohir.D11G157200 Gossypium hirsutum HOM05D000007 ORTHO05D000521 6.7e-06 56.2 343 23.3
Gorai.007G167700 Gossypium raimondii HOM05D000007 ORTHO05D000521 6.7e-06 56.2 343 23.3
Aqoxy4G00563 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 8.8e-06 55.8 412 21.1
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 8.8e-06 55.8 204 28.4
Eucgr.H02939 Eucalyptus grandis HOM05D000007 ORTHO05D000017 8.8e-06 55.8 134 28.4
FAN11G0439 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.8e-06 55.8 328 26.5
PSO478G5103 Papaver somniferum HOM05D000007 ORTHO05D000017 8.8e-06 55.8 141 28.4
Rhsim08G0220200 Rhododendron simsii HOM05D001729 ORTHO05D001155 8.8e-06 55.8 234 26.1
SGA_v2.0_scaffold136G35021 Striga asiatica HOM05D000664 ORTHO05D000491 8.8e-06 55.8 203 27.1
THA.LOC104819049 Tarenaya hassleriana HOM05D000007 ORTHO05D000521 8.8e-06 55.8 351 25.6
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 8.8e-06 55.8 241 25.7


User provided reference genes

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