Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 2.9e-48 194.9 98 100.0
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 2.6e-41 171.8 94 92.6
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.0e-33 145.6 89 78.7
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 3.4e-33 144.8 89 77.5
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 4.5e-33 144.4 91 76.9
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.2e-32 142.1 89 78.7
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 5.0e-32 141.0 89 75.3
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 6.5e-32 140.6 89 76.4
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 6.5e-32 140.6 88 76.1
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 8.5e-32 140.2 89 74.2
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 1.4e-31 139.4 88 77.3
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 2.5e-31 138.7 88 76.1
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 3.2e-31 138.3 90 72.2
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 3.2e-31 138.3 88 76.1
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 3.2e-31 138.3 89 75.3
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 5.5e-31 137.5 88 75.0
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 5.5e-31 137.5 89 73.0
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 5.5e-31 137.5 88 73.9
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 5.5e-31 137.5 87 73.6
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 7.2e-31 137.1 89 74.2
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 7.2e-31 137.1 89 74.2
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 7.2e-31 137.1 87 73.6
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 7.2e-31 137.1 94 69.1
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 7.2e-31 137.1 93 71.0
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 7.2e-31 137.1 88 73.9
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 9.4e-31 136.7 88 75.0
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 9.4e-31 136.7 90 73.3
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 9.4e-31 136.7 88 76.1
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 9.4e-31 136.7 89 73.0
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 1.2e-30 136.3 89 73.0
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 1.2e-30 136.3 90 73.3
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 1.6e-30 136.0 86 75.6
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 1.6e-30 136.0 88 76.1
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 2.1e-30 135.6 88 73.9
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 2.1e-30 135.6 88 73.9
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 2.7e-30 135.2 87 73.6
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 3.6e-30 134.8 87 72.4
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 3.6e-30 134.8 89 71.9
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 3.6e-30 134.8 89 71.9
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 3.6e-30 134.8 97 67.0
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 3.6e-30 134.8 97 67.0
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 4.7e-30 134.4 88 73.9
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 4.7e-30 134.4 88 73.9
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 4.7e-30 134.4 89 73.0
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 6.1e-30 134.0 89 71.9
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 6.1e-30 134.0 89 70.8
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 6.1e-30 134.0 89 71.9
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 7.9e-30 133.7 87 73.6
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 7.9e-30 133.7 88 71.6
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 1.0e-29 133.3 88 73.9
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.0e-29 133.3 88 71.6
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 1.0e-29 133.3 89 69.7
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 1.4e-29 132.9 89 70.8
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 1.8e-29 132.5 83 77.1
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 1.8e-29 132.5 83 77.1
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 1.8e-29 132.5 83 77.1
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.8e-29 132.5 88 70.5
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 1.8e-29 132.5 88 72.7
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 1.8e-29 132.5 93 73.1
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 1.8e-29 132.5 93 73.1
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 1.8e-29 132.5 89 69.7
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 2.3e-29 132.1 88 72.7
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 2.3e-29 132.1 96 69.8
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.3e-29 132.1 96 69.8
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.3e-29 132.1 96 69.8
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.3e-29 132.1 96 69.8
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.3e-29 132.1 96 69.8
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.3e-29 132.1 96 69.8
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 3.0e-29 131.7 94 68.1
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 3.0e-29 131.7 88 73.9
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 3.9e-29 131.3 88 73.9
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 6.7e-29 130.6 89 70.8
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 6.7e-29 130.6 88 69.3
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.8e-29 130.2 105 63.8
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.5e-28 129.4 88 70.5
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.5e-28 129.4 89 69.7
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.5e-28 129.4 89 69.7
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.5e-28 129.4 89 69.7
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 2.0e-28 129.0 88 69.3
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 4.4e-28 127.9 88 72.7
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 5.7e-28 127.5 89 69.7
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 5.7e-28 127.5 83 74.7
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 5.7e-28 127.5 81 75.3
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 9.7e-28 126.7 88 69.3
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.3e-27 126.3 89 68.5
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 2.2e-27 125.6 88 68.2
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 2.8e-27 125.2 88 67.0
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 2.8e-27 125.2 88 67.0
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 2.8e-27 125.2 87 69.0
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 3.7e-27 124.8 89 68.5
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.7e-27 124.8 89 68.5
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 4.8e-27 124.4 100 63.0
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 6.3e-27 124.0 88 67.0
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.1e-26 123.2 82 73.2
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 1.8e-26 122.5 88 65.9
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 1.1e-23 113.2 130 48.5
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 1.9e-23 112.5 88 64.8
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 3.6e-22 108.2 87 60.9
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 6.1e-22 107.5 85 62.4
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.8e-21 105.9 88 58.0
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 2.0e-20 102.4 89 60.7
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 2.6e-20 102.1 86 59.3
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 7.4e-20 100.5 51 96.1
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 2.4e-18 95.5 83 56.6
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 3.1e-18 95.1 82 57.3
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 7.0e-18 94.0 81 58.0
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 7.0e-18 94.0 98 53.1
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.6e-17 92.8 65 64.6
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 4.2e-15 84.7 58 67.2
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 1.2e-14 83.2 80 52.5
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 2.7e-14 82.0 88 44.3
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 4.7e-14 81.3 76 61.8
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 8.0e-14 80.5 57 64.9
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 8.0e-14 80.5 75 57.3
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 1.4e-13 79.7 63 61.9
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 1.4e-13 79.7 63 61.9
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 4.0e-13 78.2 57 63.2
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 5.2e-13 77.8 64 57.8
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.2e-12 76.6 57 59.6
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 1.2e-12 76.6 78 59.0
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 1.4e-10 69.7 44 72.7
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 2.4e-10 68.9 85 40.0
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 1.9e-07 59.3 42 61.9
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 2.5e-07 58.9 46 58.7
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 3.6e-06 55.1 41 58.5
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 4.7e-06 54.7 41 58.5
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 4.7e-06 54.7 41 58.5


User provided reference genes

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