Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb301690 Zea mays HOM05D000798 ORTHO05D441604 6.9e-95 350.5 163 100.0
Zm00001eb317340 Zea mays HOM05D004117 ORTHO05D004520 3.6e-11 72.4 37 81.1
Zm00001eb277000 Zea mays HOM05D000798 ORTHO05D000659 1.4e-10 70.5 37 78.4
Os06g0596300 Oryza sativa ssp. japonica HOM05D000798 ORTHO05D000659 2.3e-10 69.7 37 75.7
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 5.2e-10 68.6 37 75.7
Zm00001eb023380 Zea mays HOM05D000798 ORTHO05D000659 5.2e-10 68.6 37 75.7
Zm00001eb385960 Zea mays HOM05D000798 ORTHO05D000659 1.2e-09 67.4 37 78.4
Zm00001eb358530 Zea mays HOM05D000798 ORTHO05D000659 2.2e-08 63.2 37 70.3
Nitab4.5_0029423g0010 Nicotiana tabacum HOM05D000798 ORTHO05D000659 1.1e-07 60.8 47 48.9
CARHR008400 Cardamine hirsuta HOM05D000798 ORTHO05D000659 1.9e-07 60.1 46 52.2
Nitab4.5_0005275g0030 Nicotiana tabacum HOM05D000798 ORTHO05D000659 1.9e-07 60.1 46 50.0
Zm00001eb377350 Zea mays HOM05D000798 ORTHO05D000659 1.9e-07 60.1 107 35.5
Os06g0143400 Oryza sativa ssp. japonica HOM05D000798 ORTHO05D000659 3.2e-07 59.3 44 56.8
TAR383G0404 Trochodendron aralioides HOM05D000798 ORTHO05D000659 3.2e-07 59.3 44 56.8
CDE06G2261 Ceratophyllum demersum HOM05D000798 ORTHO05D000659 4.1e-07 58.9 44 59.1
CDE07G0473 Ceratophyllum demersum HOM05D000798 ORTHO05D000659 4.1e-07 58.9 44 59.1
MBI01_g13573_MAGBIO Magnolia biondii HOM05D000798 ORTHO05D000659 4.1e-07 58.9 44 59.1
unitig_46.g18394 Utricularia gibba HOM05D000798 ORTHO05D000659 4.1e-07 58.9 46 47.8
Os02g0644700 Oryza sativa ssp. japonica HOM05D000798 ORTHO05D000659 5.4e-07 58.5 37 64.9
unitig_746.g26582 Utricularia gibba HOM05D000798 ORTHO05D000659 7.1e-07 58.2 48 52.1
Manes.03G066532 Manihot esculenta HOM05D000798 ORTHO05D000659 9.2e-07 57.8 44 54.5
Os11g0659500 Oryza sativa ssp. japonica HOM05D000798 ORTHO05D000659 9.2e-07 57.8 37 64.9
Solyc03g097390.3 Solanum lycopersicum HOM05D000798 ORTHO05D000659 9.2e-07 57.8 46 52.2
Sopen03g028150 Solanum pennellii HOM05D000798 ORTHO05D000659 9.2e-07 57.8 46 52.2
TAR626G1740 Trochodendron aralioides HOM05D000798 ORTHO05D000659 9.2e-07 57.8 46 54.3
Carub.0001s0787 Capsella rubella HOM05D000798 ORTHO05D000659 1.6e-06 57.0 44 54.5
Lj3A877T96 Lonicera japonica HOM05D000798 ORTHO05D000659 1.6e-06 57.0 74 36.5
Manes.16G064400 Manihot esculenta HOM05D000798 ORTHO05D000659 1.6e-06 57.0 44 54.5
SalBow1G7323 Salvia bowleyana HOM05D000798 ORTHO05D000659 1.6e-06 57.0 101 32.7
Sed0012863 Sechium edule HOM05D000798 ORTHO05D000659 1.6e-06 57.0 59 42.4
SGA_v2.0_scaffold109G31038 Striga asiatica HOM05D000798 ORTHO05D000659 1.6e-06 57.0 49 46.9
ClCG11G002660 Citrullus lanatus HOM05D000798 ORTHO05D000659 2.1e-06 56.6 46 52.2
Ciclev10015449m.g Citrus clementina HOM05D000798 ORTHO05D000659 2.1e-06 56.6 74 39.2
Lsat_1_v5_gn_5_11641 Lactuca sativa HOM05D000798 ORTHO05D000659 2.1e-06 56.6 73 38.4
Sabra06G0123400 Salix brachista HOM05D000798 ORTHO05D000659 2.1e-06 56.6 44 52.3
Eucgr.C01082 Eucalyptus grandis HOM05D000798 ORTHO05D000659 2.7e-06 56.2 44 50.0
PSO017G0258 Papaver somniferum HOM05D000798 ORTHO05D000659 2.7e-06 56.2 73 39.7
PSO017G4025 Papaver somniferum HOM05D000798 ORTHO05D000659 2.7e-06 56.2 73 39.7
PSO478G0996 Papaver somniferum HOM05D000798 ORTHO05D000659 2.7e-06 56.2 73 39.7
Potri.018G072700 Populus trichocarpa HOM05D000798 ORTHO05D000659 2.7e-06 56.2 44 52.3
RcHm_v2.0_Chr2g0089811 Rosa chinensis HOM05D000798 ORTHO05D000659 2.7e-06 56.2 44 50.0
TAR371G0972 Trochodendron aralioides HOM05D000798 ORTHO05D000659 2.7e-06 56.2 41 53.7
TAR636G2412 Trochodendron aralioides HOM05D000798 ORTHO05D000659 2.7e-06 56.2 43 53.5
CiPaw.04G167300 Carya illinoinensis HOM05D000798 ORTHO05D000659 3.5e-06 55.8 101 31.7
Haze_00679 Corylus avellana HOM05D000798 ORTHO05D000659 3.5e-06 55.8 74 39.2
MELO3C005331.2 Cucumis melo HOM05D000798 ORTHO05D000659 3.5e-06 55.8 47 46.8
Hma1.2p1_0014F.1_g009190 Hydrangea macrophylla HOM05D000798 ORTHO05D000659 3.5e-06 55.8 73 38.4
Peaxi162Scf00546g00419 Petunia axillaris HOM05D000798 ORTHO05D000659 3.5e-06 55.8 46 47.8
Sc18g0001000 Simmondsia chinensis HOM05D000798 ORTHO05D000659 3.5e-06 55.8 44 54.5
TWI34G0468 Tripterygium wilfordii HOM05D000798 ORTHO05D000659 3.5e-06 55.8 44 50.0
unitig_748.g7153 Utricularia gibba HOM05D000798 ORTHO05D000659 3.5e-06 55.8 46 47.8
vmacro19128 Vaccinium macrocarpon HOM05D000798 ORTHO05D000659 3.5e-06 55.8 73 38.4
CAN.G713.27 Capsicum annuum HOM05D000798 ORTHO05D000659 4.6e-06 55.5 46 45.7
CiPaw.03G236000 Carya illinoinensis HOM05D000798 ORTHO05D000659 4.6e-06 55.5 46 47.8
ClCG06G010460 Citrullus lanatus HOM05D000798 ORTHO05D000659 4.6e-06 55.5 46 50.0
MELO3C025309.2 Cucumis melo HOM05D000798 ORTHO05D000659 4.6e-06 55.5 46 50.0
CsaV3_1G030920 Cucumis sativus L. HOM05D000798 ORTHO05D000659 4.6e-06 55.5 46 50.0
Duzib150G1370 Durio zibethinus HOM05D000798 ORTHO05D000659 4.6e-06 55.5 44 54.5
Gohir.A07G003000 Gossypium hirsutum HOM05D000798 ORTHO05D000659 4.6e-06 55.5 44 52.3
Gohir.D07G003300 Gossypium hirsutum HOM05D000798 ORTHO05D000659 4.6e-06 55.5 44 52.3
Potri.006G155800 Populus trichocarpa HOM05D000798 ORTHO05D000659 4.6e-06 55.5 44 50.0
Potri.006G157200 Populus trichocarpa HOM05D000798 ORTHO05D000659 4.6e-06 55.5 44 50.0
Atru.chr11.330 Acer truncatum HOM05D000798 ORTHO05D000659 6.0e-06 55.1 46 47.8
Actinidia25560 Actinidia chinensis HOM05D000798 ORTHO05D000659 6.0e-06 55.1 98 33.7
AL1G18940 Arabidopsis lyrata HOM05D000798 ORTHO05D000659 6.0e-06 55.1 44 52.3
AT1G08510 Arabidopsis thaliana HOM05D000798 ORTHO05D000659 6.0e-06 55.1 44 52.3
arahy.Tifrunner.gnm1.ann1.R2IV6A Arachis hypogaea HOM05D000798 ORTHO05D000659 6.0e-06 55.1 46 47.8
CSS0013421 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 6.0e-06 55.1 46 47.8
CSS0032542 Camellia sinensis var. sinensis HOM05D000798 ORTHO05D000659 6.0e-06 55.1 46 47.8
CiPaw.11G005100 Carya illinoinensis HOM05D000798 ORTHO05D000659 6.0e-06 55.1 73 38.4
COL.COLO4_34945 Corchorus olitorius HOM05D000798 ORTHO05D000659 6.0e-06 55.1 44 52.3
Duzib168G2125 Durio zibethinus HOM05D000798 ORTHO05D000659 6.0e-06 55.1 44 52.3
Lj9A480T86 Lonicera japonica HOM05D000798 ORTHO05D000659 6.0e-06 55.1 73 39.7
Oeu018250.1 Olea europaea HOM05D000798 ORTHO05D000659 6.0e-06 55.1 38 57.9
Rhsim08G0191900 Rhododendron simsii HOM05D000798 ORTHO05D000659 6.0e-06 55.1 98 33.7
GSVIVG01015448001 Vitis vinifera HOM05D000798 ORTHO05D000659 6.0e-06 55.1 46 47.8
Aa31sc55G40 Aethionema arabicum HOM05D000798 ORTHO05D000659 7.8e-06 54.7 45 48.9
Aqoxy7G01861 Aquilegia oxysepala HOM05D000798 ORTHO05D000659 7.8e-06 54.7 45 51.1
CANSAT80G1750 Cannabis sativa HOM05D000798 ORTHO05D000659 7.8e-06 54.7 73 35.6
AUR62038840 Chenopodium quinoa HOM05D000798 ORTHO05D000659 7.8e-06 54.7 77 37.7
Cc04_g09870 Coffea canephora HOM05D000798 ORTHO05D000659 7.8e-06 54.7 73 38.4
Migut.K00469 Erythranthe guttata HOM05D000798 ORTHO05D000659 7.8e-06 54.7 44 50.0
Gohir.A08G240550 Gossypium hirsutum HOM05D000798 ORTHO05D000659 7.8e-06 54.7 44 52.3
Gohir.A12G141600 Gossypium hirsutum HOM05D000798 ORTHO05D000659 7.8e-06 54.7 72 37.5
Gohir.D08G261200 Gossypium hirsutum HOM05D000798 ORTHO05D000659 7.8e-06 54.7 44 52.3
Gorai.004G279300 Gossypium raimondii HOM05D000798 ORTHO05D000659 7.8e-06 54.7 44 52.3
Phvul.009G200200 Phaseolus vulgaris HOM05D000798 ORTHO05D000659 7.8e-06 54.7 44 50.0
Sed0003860 Sechium edule HOM05D000798 ORTHO05D000659 7.8e-06 54.7 59 40.7
PGSC0003DMG400026494 Solanum tuberosum HOM05D000798 ORTHO05D000659 7.8e-06 54.7 46 50.0
Thecc.02G215100 Theobroma cacao HOM05D000798 ORTHO05D000659 7.8e-06 54.7 74 37.8
TAR622G1035 Trochodendron aralioides HOM05D000798 ORTHO05D000659 7.8e-06 54.7 73 37.0
TAR622G1419 Trochodendron aralioides HOM05D000798 ORTHO05D000659 7.8e-06 54.7 73 37.0
GSVIVG01008575001 Vitis vinifera HOM05D000798 ORTHO05D000659 7.8e-06 54.7 73 38.4


User provided reference genes

Program Settings