Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb301600 Zea mays HOM05D019809 ORTHO05D002777 4.9e-61 237.7 123 100.0
Zm00001eb409120 Zea mays HOM05D019809 ORTHO05D002777 1.6e-51 206.1 143 79.7
Zm00001eb153920 Zea mays HOM05D019809 ORTHO05D002777 1.5e-46 189.5 137 79.6
Zm00001eb005820 Zea mays HOM05D000343 ORTHO05D002777 2.8e-40 168.7 128 74.2
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 2.5e-33 145.6 81 96.3
Zm00001eb137980 Zea mays HOM05D019809 ORTHO05D004386 1.4e-31 139.8 133 65.4
Zm00001eb050720 Zea mays HOM05D000343 ORTHO05D002777 1.8e-31 139.4 81 92.6
Os03g0178100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D002777 4.0e-31 138.3 127 63.8
Zm00001eb282330 Zea mays HOM05D019809 ORTHO05D004386 6.9e-31 137.5 133 63.9
Zm00001eb178640 Zea mays HOM05D019809 ORTHO05D002777 9.7e-25 117.1 93 69.9
MBI19_g11826_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 2.5e-20 102.4 130 46.9
Lj7C220T7 Lonicera japonica HOM05D000343 ORTHO05D002777 3.3e-17 92.0 130 48.5
FAN27G2559 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.7e-17 91.3 127 46.5
TAR383G0628 Trochodendron aralioides HOM05D000343 ORTHO05D002777 9.7e-17 90.5 130 43.8
FvH4_2g30930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.2e-16 89.4 127 45.7
FAN15G2596 Fragaria x ananassa HOM05D000343 ORTHO05D002777 2.2e-16 89.4 127 44.9
RcHm_v2.0_Chr6g0311921 Rosa chinensis HOM05D000343 ORTHO05D002777 2.8e-16 89.0 129 45.0
PGR031G2498 Punica granatum HOM05D000343 ORTHO05D002777 3.7e-16 88.6 127 45.7
FAN24G0686 Fragaria x ananassa HOM05D000343 ORTHO05D002777 4.8e-16 88.2 127 44.9
MD15G1049400 Malus domestica HOM05D000343 ORTHO05D002777 4.8e-16 88.2 127 46.5
Rhsim02G0200800 Rhododendron simsii HOM05D000343 ORTHO05D002777 4.8e-16 88.2 126 46.8
Atru.chr7.1842 Acer truncatum HOM05D000343 ORTHO05D002777 6.3e-16 87.8 134 44.0
Nn8g38654 Nelumbo nucifera HOM05D000343 ORTHO05D002777 6.3e-16 87.8 131 42.0
HanXRQChr03g0065671 Helianthus annuus HOM05D000343 ORTHO05D002777 8.2e-16 87.4 125 44.0
EL10Ac2g03774 Beta vulgaris HOM05D000343 ORTHO05D002777 1.4e-15 86.7 121 48.8
Hma1.2p1_1980F.1_g309870 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 1.4e-15 86.7 127 45.7
HPP92_011059 Vanilla planifolia HOM05D000343 ORTHO05D002777 4.1e-15 85.1 129 47.3
GSVIVG01035474001 Vitis vinifera HOM05D000343 ORTHO05D002777 4.1e-15 85.1 128 45.3
Cfa017866 Carpinus fangiana HOM05D000343 ORTHO05D002777 5.3e-15 84.7 131 42.7
FAN20G2735 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.3e-15 84.7 127 44.1
Nitab4.5_0007459g0030 Nicotiana tabacum HOM05D000343 ORTHO05D002777 5.3e-15 84.7 130 43.8
BcaB08g36468 Brassica carinata HOM05D000343 ORTHO05D002777 9.1e-15 84.0 129 45.7
C09p54810 Brassica napus HOM05D000343 ORTHO05D002777 9.1e-15 84.0 130 45.4
BolC9t58341H Brassica oleracea HOM05D000343 ORTHO05D002777 9.1e-15 84.0 130 45.4
CSS0040015 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 9.1e-15 84.0 130 43.8
Aqoxy7G03994 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 1.2e-14 83.6 132 40.9
Solyc08g061610.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 1.2e-14 83.6 128 45.3
Sopen08g017060 Solanum pennellii HOM05D000343 ORTHO05D002777 1.2e-14 83.6 128 45.3
TWI32G1354 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 1.2e-14 83.6 130 43.1
PSO135G0347 Papaver somniferum HOM05D000343 ORTHO05D002777 1.5e-14 83.2 133 42.1
vmacro11174 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 1.5e-14 83.2 133 44.4
Thhalv10012640m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 2.0e-14 82.8 129 45.0
Nitab4.5_0000446g0160 Nicotiana tabacum HOM05D000343 ORTHO05D002777 2.0e-14 82.8 129 44.2
AUR62009076 Chenopodium quinoa HOM05D000343 ORTHO05D002777 2.6e-14 82.4 129 45.0
Ca_15832_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 3.4e-14 82.0 127 42.5
Peaxi162Scf00486g00096 Petunia axillaris HOM05D000343 ORTHO05D002777 3.4e-14 82.0 131 45.0
A10p18790 Brassica napus HOM05D000343 ORTHO05D002777 5.9e-14 81.3 130 44.6
BraA10t43959Z Brassica rapa HOM05D000343 ORTHO05D002777 5.9e-14 81.3 130 44.6
CANSAT25G0648 Cannabis sativa HOM05D000343 ORTHO05D002777 5.9e-14 81.3 130 40.8
Lj1g0013438 Lotus japonicus HOM05D000343 ORTHO05D002777 5.9e-14 81.3 130 43.8
Prupe.1G403700 Prunus persica HOM05D000343 ORTHO05D002777 5.9e-14 81.3 130 41.5
COL.COLO4_21144 Corchorus olitorius HOM05D000343 ORTHO05D002777 7.7e-14 80.9 134 39.6
Gohir.A06G083200 Gossypium hirsutum HOM05D000343 ORTHO05D002777 7.7e-14 80.9 130 42.3
AUR62020591 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.0e-13 80.5 129 44.2
THA.LOC104810955 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 1.0e-13 80.5 127 42.5
Gohir.D06G082900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.3e-13 80.1 130 41.5
Gorai.010G096400 Gossypium raimondii HOM05D000343 ORTHO05D002777 1.3e-13 80.1 130 41.5
Haze_18301 Corylus avellana HOM05D000343 ORTHO05D002777 1.7e-13 79.7 131 42.0
Dinv22939 Davidia involucrata HOM05D000343 ORTHO05D002777 1.7e-13 79.7 127 42.5
ATR0598G285 Amborella trichopoda HOM05D000343 ORTHO05D002777 2.9e-13 79.0 136 40.4
Duzib150G1472 Durio zibethinus HOM05D000343 ORTHO05D002777 2.9e-13 79.0 130 40.8
Sabra06G0170100 Salix brachista HOM05D000343 ORTHO05D002777 2.9e-13 79.0 133 41.4
Sabra18G0045800 Salix brachista HOM05D000343 ORTHO05D002777 2.9e-13 79.0 133 40.6
AL6G32890 Arabidopsis lyrata HOM05D000343 ORTHO05D002777 3.8e-13 78.6 129 42.6
CAN.G117.6 Capsicum annuum HOM05D000343 ORTHO05D002777 3.8e-13 78.6 125 44.8
Ciclev10007408m.g Citrus clementina HOM05D000343 ORTHO05D002777 3.8e-13 78.6 133 40.6
Manes.03G053565 Manihot esculenta HOM05D000343 ORTHO05D002777 3.8e-13 78.6 130 42.3
QL02p017067 Quercus lobata HOM05D000343 ORTHO05D002777 3.8e-13 78.6 130 40.8
Sp6g23260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 3.8e-13 78.6 127 43.3
Carub.0006s1957 Capsella rubella HOM05D000343 ORTHO05D002777 5.0e-13 78.2 129 42.6
Eucgr.C00731 Eucalyptus grandis HOM05D000343 ORTHO05D002777 5.0e-13 78.2 133 40.6
Psat5g030200 Pisum sativum HOM05D000343 ORTHO05D002777 5.0e-13 78.2 127 41.7
TPR.G3522 Trifolium pratense HOM05D000343 ORTHO05D002777 5.0e-13 78.2 131 41.2
Lsat_1_v5_gn_7_58281 Lactuca sativa HOM05D000343 ORTHO05D002777 6.5e-13 77.8 128 40.6
DCAR_001233 Daucus carota HOM05D000343 ORTHO05D002777 8.5e-13 77.4 129 39.5
Potri.018G047800 Populus trichocarpa HOM05D000343 ORTHO05D002777 8.5e-13 77.4 133 40.6
Aa31LG1G13490 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.1e-12 77.0 129 42.6
CDE06G1102 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.1e-12 77.0 127 38.6
Glyma.06G056300 Glycine max HOM05D000343 ORTHO05D002777 1.1e-12 77.0 127 38.6
Hund03296 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.1e-12 77.0 127 43.3
Thecc.09G063900 Theobroma cacao HOM05D000343 ORTHO05D002777 1.1e-12 77.0 130 40.0
AT5G21930 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 1.4e-12 76.6 129 41.9
Phvul.009G082400 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 1.4e-12 76.6 127 40.2
Cpa.g.sc126.19 Carica papaya HOM05D000343 ORTHO05D002777 1.9e-12 76.3 135 40.7
Duzib168G0767 Durio zibethinus HOM05D000343 ORTHO05D002777 1.9e-12 76.3 130 39.2
Medtr3g105190 Medicago truncatula HOM05D000343 ORTHO05D002777 1.9e-12 76.3 127 40.9
CsaV3_4G036070 Cucumis sativus L. HOM05D000343 ORTHO05D002777 4.2e-12 75.1 132 38.6
Sed0027862 Sechium edule HOM05D000343 ORTHO05D002777 7.2e-12 74.3 128 39.8
CiPaw.15G091500 Carya illinoinensis HOM05D000343 ORTHO05D002777 9.4e-12 73.9 127 40.9
Sed0004786 Sechium edule HOM05D000343 ORTHO05D002777 1.2e-11 73.6 124 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1654 Anthoceros agrestis HOM05D000343 ORTHO05D002777 1.6e-11 73.2 131 42.0
arahy.Tifrunner.gnm1.ann1.ALH963 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.6e-11 73.2 132 40.2
Sc09g0010130 Simmondsia chinensis HOM05D000343 ORTHO05D002777 2.1e-11 72.8 132 40.9
MELO3C016915.2 Cucumis melo HOM05D000343 ORTHO05D002777 2.7e-11 72.4 132 37.1
arahy.Tifrunner.gnm1.ann1.Y6FS7J Arachis hypogaea HOM05D000343 ORTHO05D002777 3.6e-11 72.0 132 39.4
Hund19419 Selenicereus undatus HOM05D000343 ORTHO05D002777 3.6e-11 72.0 127 40.9
Lalb_Chr23g0267981 Lupinus albus HOM05D000343 ORTHO05D002777 4.7e-11 71.6 127 37.8
Ah.10g033930 Amaranthus hybridus HOM05D000343 ORTHO05D002777 1.0e-10 70.5 129 39.5
Oeu001679.1 Olea europaea HOM05D000343 ORTHO05D002777 1.0e-10 70.5 128 39.8
ECA240G4338 Erigeron canadensis HOM05D000343 ORTHO05D002777 3.0e-10 68.9 128 39.1
SalBow4G1343 Salvia bowleyana HOM05D000343 ORTHO05D002777 3.0e-10 68.9 130 40.0
SGA_v2.0_scaffold20G09154 Striga asiatica HOM05D000343 ORTHO05D002777 3.9e-10 68.6 128 39.8
ClCG05G015770 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.0e-09 66.2 132 34.1
unitig_748.g7563 Utricularia gibba HOM05D000343 ORTHO05D002777 9.7e-09 63.9 128 38.3
Cc08_g01100 Coffea canephora HOM05D000343 ORTHO05D002777 3.7e-08 62.0 81 44.4
VMungo1309G2720 Vigna mungo HOM05D000343 ORTHO05D002777 3.7e-08 62.0 127 35.4
Migut.A00072 Erythranthe guttata HOM05D000343 ORTHO05D002777 8.2e-08 60.8 130 36.2
SMO358G0202 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 1.5e-06 56.6 131 36.6
Mapoly0079s0021 Marchantia polymorpha HOM05D000343 ORTHO05D002777 4.5e-06 55.1 132 36.4


User provided reference genes

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