Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 0.0e+00 2175.2 1130 100.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-264 916.8 1156 45.6
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.3e-256 890.6 668 70.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 2.0e-254 883.2 1163 44.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 8.9e-250 867.8 1149 44.5
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 1.2e-249 867.5 1165 43.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.2e-249 867.5 1149 44.3
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 3.7e-248 862.4 1153 43.5
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 2.0e-246 856.7 1157 42.5
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 8.6e-245 851.3 1152 43.1
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.4e-242 844.0 1154 41.9
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.0e-241 840.1 1223 42.2
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 4.4e-241 839.0 1160 42.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.4e-239 833.2 1160 43.1
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 5.4e-239 832.0 1143 42.6
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 7.8e-238 828.2 1163 41.4
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.0e-237 827.8 1161 42.2
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 8.6e-237 824.7 1158 42.4
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 3.3e-236 822.8 1149 41.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 2.8e-235 819.7 1218 41.1
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.8e-234 817.0 1145 42.4
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 1.2e-233 814.3 1157 41.4
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 1.2e-233 814.3 1177 40.1
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.2e-233 814.3 1147 42.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 2.6e-233 813.1 1151 41.4
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.3e-232 810.8 1160 41.6
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.2e-232 810.1 1151 41.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 2.9e-232 809.7 1159 40.8
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.1e-231 807.7 1151 40.6
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 3.2e-231 806.2 1175 41.3
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 4.1e-231 805.8 1162 42.1
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 5.4e-231 805.4 1147 42.1
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.7e-230 803.1 1155 41.0
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 3.5e-230 802.7 1150 41.2
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 7.8e-230 801.6 1143 40.7
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.0e-229 799.7 1163 40.8
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.1e-228 797.7 1214 39.7
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 4.3e-228 795.8 1147 41.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 6.2e-227 792.0 1153 40.7
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.8e-226 790.4 1152 41.0
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 2.6e-225 786.6 1148 39.5
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.4e-224 781.9 1132 40.6
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.4e-223 780.8 1157 39.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 2.7e-222 776.5 1146 40.8
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 6.0e-222 775.4 1140 40.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 6.0e-222 775.4 1155 40.6
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.3e-220 769.6 1142 40.5
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 5.6e-220 768.8 1155 39.5
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 9.6e-220 768.1 1150 39.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 6.2e-219 765.4 1145 39.1
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.3e-218 762.3 1125 40.4
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 9.0e-218 761.5 1120 40.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.3e-216 757.7 1113 41.3
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.3e-216 757.7 1158 40.2
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 6.4e-216 755.4 1140 40.3
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 5.4e-215 752.3 1147 40.0
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 9.3e-215 751.5 1149 39.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.0e-213 748.0 1146 40.2
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.3e-213 746.9 1130 40.4
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 1.9e-212 743.8 1141 39.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.6e-209 733.4 1103 40.1
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.6e-206 724.2 1071 40.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 3.5e-206 723.0 1125 39.6
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 9.6e-204 714.9 1154 38.4
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.4e-202 710.3 1141 39.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 4.0e-202 709.5 1159 37.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 7.4e-196 688.7 1149 37.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.6e-195 687.6 1153 36.9
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 2.1e-195 687.2 1137 37.1
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.8e-195 686.8 1162 36.6
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 3.1e-194 683.3 1158 36.4
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.5e-193 681.0 1103 37.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 7.6e-193 678.7 1025 39.3
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.0e-192 678.3 1153 36.9
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.2e-192 677.2 1151 37.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 6.5e-192 675.6 1152 36.2
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 6.5e-192 675.6 1141 36.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.7e-190 670.2 1156 35.6
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.7e-190 670.2 1032 39.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.1e-190 669.1 1148 36.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 7.9e-190 668.7 1138 36.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.9e-190 668.7 1140 37.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.8e-189 667.5 1144 36.9
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.9e-188 664.1 1139 36.4
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.2e-187 660.6 1166 36.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.6e-182 644.4 1055 38.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.4e-173 614.8 1085 37.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.8e-171 607.1 1133 35.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.1e-170 605.1 1154 35.6
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.9e-168 597.0 1075 36.7
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.1e-166 589.3 963 38.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.2e-159 567.0 1116 35.3
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.3e-155 555.1 976 36.4
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.2e-155 554.3 932 36.9
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 3.7e-155 553.5 913 37.6
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.4e-149 535.0 1046 34.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 5.4e-122 443.4 1180 29.3
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.5e-119 435.3 267 85.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 8.4e-107 392.9 1183 27.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.1e-95 355.9 692 34.8
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.6e-94 352.1 1136 27.1
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.0e-81 307.0 429 41.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.5e-79 302.4 443 41.5
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.6e-76 291.6 535 33.8
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 7.6e-76 290.0 430 41.6
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-72 279.3 338 44.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.2e-66 258.1 449 37.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.0e-63 248.8 510 32.2
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 7.4e-63 246.9 228 53.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.8e-62 244.2 236 49.6
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.6e-57 229.2 1288 24.1
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 5.0e-51 207.6 154 60.4
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.5e-51 207.2 193 56.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.5e-42 179.5 264 42.0
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.3e-38 166.4 146 54.8
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 2.7e-36 158.7 92 90.2
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.8e-35 154.8 158 50.0
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.6e-33 148.3 328 33.2
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.5e-31 140.6 219 39.7
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.2e-28 133.3 251 35.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.6e-28 132.9 191 39.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.0e-28 132.5 119 52.1
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.2e-24 117.9 163 42.9
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 5.7e-23 114.4 363 26.7
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 2.2e-22 112.5 134 44.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 7.0e-21 107.5 176 37.5
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.7e-19 102.8 115 46.1
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.9e-18 99.4 121 43.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.3e-18 98.2 123 43.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 8.0e-17 94.0 147 38.8
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 8.0e-17 94.0 147 38.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.1e-16 93.6 170 39.4
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.2e-16 91.3 87 54.0
Zm00001eb105150 Zea mays HOM05D002451 ORTHO05D005601 2.6e-15 89.0 46 95.7
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 4.4e-15 88.2 69 62.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-13 83.6 75 54.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.1e-13 81.6 89 50.6
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.1e-13 81.6 89 50.6
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 4.1e-13 81.6 67 50.7
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 3.5e-12 78.6 90 41.1
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 4.6e-12 78.2 143 33.6
Zm00001eb350570 Zea mays HOM05D002451 ORTHO05D005601 6.0e-12 77.8 41 97.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 3.0e-11 75.5 76 44.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-10 73.6 125 35.2
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.6e-09 69.7 53 62.3
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.6e-09 68.6 53 60.4
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.3e-08 65.9 58 51.7
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.2e-07 63.5 76 46.1
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.9e-06 58.2 57 49.1
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 8.3e-06 57.4 73 38.4


User provided reference genes

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