Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 2.8e-126 455.3 232 100.0
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 3.2e-98 362.1 228 80.7
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 2.5e-82 309.3 223 67.7
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 9.8e-79 297.4 221 65.6
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 8.3e-78 294.3 223 64.6
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.4e-77 292.7 226 66.4
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 9.2e-77 290.8 224 63.4
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 9.2e-77 290.8 226 64.6
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 1.2e-76 290.4 226 66.4
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 2.0e-76 289.7 222 64.0
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 6.0e-76 288.1 220 65.0
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 1.0e-75 287.3 226 65.0
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.0e-75 287.3 226 64.6
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 1.0e-75 287.3 222 64.0
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 3.0e-75 285.8 226 64.6
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 3.0e-75 285.8 221 63.8
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 3.9e-75 285.4 219 63.0
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 5.0e-75 285.0 221 65.2
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 6.6e-75 284.6 222 64.0
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 6.6e-75 284.6 226 61.1
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 8.6e-75 284.3 229 62.9
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 1.1e-74 283.9 240 60.0
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.5e-74 283.5 223 61.9
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 1.5e-74 283.5 221 63.3
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 2.5e-74 282.7 226 65.0
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 2.5e-74 282.7 224 63.4
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 3.3e-74 282.3 224 63.4
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 3.3e-74 282.3 223 63.2
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 3.3e-74 282.3 225 64.0
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 4.3e-74 282.0 221 62.9
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 7.3e-74 281.2 222 64.4
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 7.3e-74 281.2 223 62.3
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 9.5e-74 280.8 222 62.2
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 2.1e-73 279.6 226 65.0
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 3.6e-73 278.9 222 61.7
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 3.6e-73 278.9 221 62.9
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 4.7e-73 278.5 213 62.9
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 6.2e-73 278.1 219 62.6
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 8.1e-73 277.7 222 62.2
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 1.1e-72 277.3 222 61.3
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 1.8e-72 276.6 224 61.6
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 2.3e-72 276.2 227 59.9
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 3.1e-72 275.8 221 61.1
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.0e-72 275.4 222 60.4
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.2e-72 275.0 222 59.9
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 8.9e-72 274.2 224 60.3
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 1.5e-71 273.5 211 64.9
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.5e-71 273.5 222 59.9
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 1.5e-71 273.5 222 59.9
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 2.0e-71 273.1 222 59.5
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 2.0e-71 273.1 221 62.0
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 2.0e-71 273.1 228 61.4
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.6e-71 272.7 221 60.2
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 3.4e-71 272.3 228 60.1
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 4.4e-71 271.9 226 60.2
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 4.4e-71 271.9 224 59.8
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 5.8e-71 271.6 224 57.6
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 7.5e-71 271.2 222 59.9
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 7.5e-71 271.2 221 60.2
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 9.9e-71 270.8 222 61.3
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 1.3e-70 270.4 223 60.5
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 3.7e-70 268.9 224 61.2
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 4.9e-70 268.5 222 59.0
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 4.9e-70 268.5 222 59.0
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 6.4e-70 268.1 224 58.9
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 6.4e-70 268.1 221 60.2
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 8.3e-70 267.7 221 59.7
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 1.9e-69 266.5 222 58.6
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 1.9e-69 266.5 222 59.9
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 2.4e-69 266.2 222 58.1
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 2.4e-69 266.2 221 60.6
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 3.2e-69 265.8 222 58.1
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 3.2e-69 265.8 207 62.3
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 5.4e-69 265.0 222 60.4
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 7.1e-69 264.6 226 60.6
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 2.1e-68 263.1 223 61.4
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 1.0e-67 260.8 222 58.6
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 2.3e-67 259.6 225 56.9
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 3.0e-67 259.2 222 58.6
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 3.0e-67 259.2 227 59.0
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 8.6e-67 257.7 222 58.6
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 8.6e-67 257.7 223 60.1
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 1.5e-66 256.9 208 59.6
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 4.3e-66 255.4 221 59.3
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 9.5e-66 254.2 227 56.4
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 3.6e-65 252.3 216 61.6
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 4.7e-65 251.9 225 57.3
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 2.4e-64 249.6 213 60.1
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 3.1e-64 249.2 219 57.1
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 5.2e-64 248.4 224 56.7
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 5.8e-63 245.0 211 56.9
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 9.9e-63 244.2 218 56.4
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 3.4e-55 219.2 250 46.8
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.4e-53 213.0 219 51.6
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 1.7e-51 206.8 223 49.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 1.3e-49 200.7 178 60.1
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 1.5e-47 193.7 149 63.1
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.0e-43 181.0 148 62.2
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 3.9e-43 179.1 211 45.5
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 1.8e-40 170.2 217 43.3
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 2.0e-39 166.8 218 43.1
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 3.5e-36 156.0 148 53.4
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.3e-35 153.3 148 52.7
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 3.7e-33 146.0 128 54.7
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 2.0e-31 140.2 221 39.4
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 1.3e-30 137.5 218 35.3
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 1.1e-29 134.4 215 34.4
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 4.2e-29 132.5 218 34.9
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 6.7e-27 125.2 118 55.1
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.8e-25 119.8 86 67.4
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 6.3e-25 118.6 110 52.7
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 2.6e-23 113.2 158 43.0
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 1.8e-19 100.5 223 31.4
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 3.3e-18 96.3 72 63.9
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 9.7e-10 68.2 83 44.6
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 9.7e-10 68.2 83 44.6


User provided reference genes

Program Settings