Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb299950 Zea mays HOM05D004088 ORTHO05D004736 0.0e+00 1391.3 724 100.0
Zm00001eb420620 Zea mays HOM05D004088 ORTHO05D004736 3.8e-302 1041.2 771 73.7
Os07g0147800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.0e-239 832.8 700 64.0
Zm00001eb059840 Zea mays HOM05D004088 ORTHO05D004736 5.8e-170 602.1 677 48.7
Os03g0784600 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.3e-96 356.7 399 49.9
Zm00001eb246510 Zea mays HOM05D004088 ORTHO05D004736 1.7e-76 291.6 327 48.3
Os03g0784500 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 9.2e-75 285.8 271 56.8
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.1e-71 274.6 754 30.8
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.0e-54 217.2 751 27.8
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 1.5e-53 215.3 750 26.0
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.5e-53 215.3 752 27.5
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.6e-53 214.5 697 26.5
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 2.9e-52 211.1 685 26.9
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 6.4e-52 209.9 706 27.9
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 5.5e-51 206.8 773 26.8
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 9.3e-51 206.1 770 28.3
Zm00001eb136010 Zea mays HOM05D004088 ORTHO05D004736 1.2e-50 205.7 580 31.9
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 2.7e-50 204.5 669 29.7
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 7.9e-50 203.0 743 27.2
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.8e-49 201.8 581 30.8
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 2.3e-49 201.4 688 27.8
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 5.1e-49 200.3 692 27.5
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 6.7e-49 199.9 731 26.5
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 2.5e-48 198.0 766 26.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 7.4e-48 196.4 650 27.1
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.6e-47 195.3 730 26.4
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.1e-47 194.9 710 25.2
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 2.8e-47 194.5 777 27.3
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.8e-46 191.8 752 25.1
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 2.4e-46 191.4 731 26.5
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 2.4e-46 191.4 752 25.4
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 3.1e-46 191.0 731 26.9
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.1e-46 191.0 803 25.0
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 4.0e-46 190.7 766 25.1
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 9.0e-46 189.5 755 26.6
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 1.5e-45 188.7 731 25.2
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.5e-45 188.7 689 26.4
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.5e-45 188.7 755 25.8
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 2.6e-45 188.0 737 25.8
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.5e-45 187.2 667 28.3
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 4.5e-45 187.2 682 27.4
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 4.5e-45 187.2 759 25.4
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 5.8e-45 186.8 706 27.3
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 5.8e-45 186.8 693 26.7
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 1.3e-44 185.7 760 25.7
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.2e-44 184.9 743 26.8
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 2.9e-44 184.5 681 27.3
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 4.9e-44 183.7 768 25.9
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 4.9e-44 183.7 749 25.9
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 6.5e-44 183.3 679 27.4
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.5e-43 181.4 747 25.2
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 7.1e-43 179.9 741 25.9
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.2e-42 179.1 711 25.7
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 2.7e-42 177.9 716 25.0
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 3.5e-42 177.6 721 26.6
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 6.0e-42 176.8 789 26.7
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 6.0e-42 176.8 747 25.0
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 7.9e-42 176.4 634 28.7
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 7.9e-42 176.4 634 28.7
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.0e-41 176.0 732 26.6
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 1.0e-41 176.0 784 25.1
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.8e-41 175.3 699 25.5
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.8e-41 175.3 749 25.2
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 2.3e-41 174.9 726 25.3
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 2.3e-41 174.9 697 25.8
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 3.0e-41 174.5 746 25.6
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 5.1e-41 173.7 729 24.7
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 6.7e-41 173.3 720 24.4
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 6.7e-41 173.3 689 25.4
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 6.7e-41 173.3 743 26.0
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.1e-40 172.6 721 25.0
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.5e-40 172.2 693 25.4
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 9.6e-40 169.5 730 25.5
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 2.1e-39 168.3 719 24.6
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 4.8e-39 167.2 706 24.2
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 8.2e-39 166.4 714 25.1
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 1.4e-38 165.6 741 24.3
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 3.1e-38 164.5 716 24.6
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.1e-38 164.1 741 23.9
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 5.3e-38 163.7 684 25.9
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 2.9e-36 157.9 740 25.1
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.1e-35 156.0 792 25.0
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 2.5e-35 154.8 688 24.9
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 9.3e-35 152.9 628 25.2
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.2e-34 152.5 725 22.8
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 1.2e-34 152.5 640 26.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 1.2e-34 152.5 796 24.2
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.2e-34 152.5 418 28.7
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 6.1e-34 150.2 648 23.3
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 1.8e-33 148.7 699 24.0
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 6.7e-33 146.7 679 24.0
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 2.5e-32 144.8 618 26.1
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 5.7e-32 143.7 645 25.9
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 7.4e-32 143.3 716 24.2
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.8e-31 141.4 498 27.7
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 3.7e-31 141.0 508 27.4
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 4.8e-31 140.6 693 23.7
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 4.8e-31 140.6 500 24.4
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 4.8e-31 140.6 698 24.4
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 1.1e-30 139.4 426 28.6
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 1.4e-30 139.0 773 23.9
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 1.8e-30 138.7 698 22.6
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 3.1e-30 137.9 686 25.9
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 6.9e-30 136.7 718 24.9
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 1.5e-29 135.6 461 24.3
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 2.0e-29 135.2 479 24.4
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 2.0e-29 135.2 682 24.0
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.4e-29 134.4 742 23.5
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 7.7e-29 133.3 694 22.5
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 2.9e-28 131.3 766 23.0
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 6.5e-28 130.2 694 22.6
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 6.5e-28 130.2 717 24.3
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 1.9e-27 128.6 682 24.3
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 4.2e-27 127.5 529 26.1
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 7.2e-27 126.7 509 25.9
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 7.2e-27 126.7 509 25.9
MBI02_g32067_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.2e-26 125.9 545 26.8
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 6.1e-26 123.6 567 23.8
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.8e-25 122.1 629 25.0
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.3e-25 121.7 711 23.3
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 3.9e-25 120.9 705 24.3
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 5.1e-25 120.6 713 23.8
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.1e-25 120.6 691 24.6
Os09g0133800 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 2.0e-24 118.6 594 23.2
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.3e-24 117.9 626 22.5
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 5.7e-24 117.1 132 46.2
Zm00001eb261820 Zea mays HOM05D004088 ORTHO05D004736 5.3e-22 110.5 621 23.8
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 9.1e-22 109.8 653 24.5
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.6e-21 108.2 691 22.7
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 4.5e-21 107.5 684 23.1
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 7.7e-21 106.7 629 24.3
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 1.3e-20 105.9 689 21.6
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 8.5e-20 103.2 501 24.2
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 1.4e-17 95.9 648 23.1
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 5.2e-17 94.0 316 29.4
CDE04G2970 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.0e-16 92.0 363 26.2
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 3.3e-16 91.3 559 22.9
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 3.3e-16 91.3 107 40.2
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 4.4e-16 90.9 690 22.5
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 2.2e-15 88.6 241 31.1
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 2.8e-15 88.2 116 37.1
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 4.8e-15 87.4 426 23.7
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 6.3e-15 87.0 545 23.3
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 6.3e-15 87.0 705 22.4
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 1.4e-14 85.9 570 23.9
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 2.4e-14 85.1 595 24.0
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.2e-13 82.8 331 27.2
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 1.6e-13 82.4 593 21.2
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 3.5e-13 81.3 578 22.5
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 7.7e-13 80.1 686 22.2
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 2.2e-12 78.6 116 33.6
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.9e-11 75.5 827 19.2
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 3.2e-11 74.7 130 32.3
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 1.2e-10 72.8 116 35.3
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 1.6e-10 72.4 299 27.4
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 6.1e-10 70.5 283 26.5
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 2.3e-09 68.6 140 27.9
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 3.3e-08 64.7 348 24.1
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.7e-08 63.9 585 21.7
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 7.5e-08 63.5 105 31.4
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 1.3e-07 62.8 364 24.5
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 2.8e-07 61.6 270 22.6
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 2.8e-07 61.6 51 51.0
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.7e-07 61.2 122 28.7
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 6.3e-07 60.5 589 21.9
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 1.1e-06 59.7 68 38.2
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.1e-06 59.7 105 30.5
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.4e-06 59.3 294 23.5
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.4e-06 58.5 69 42.0
Mapoly0015s0020 Marchantia polymorpha HOM05D004088 ORTHO05D004736 3.1e-06 58.2 403 24.1
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 5.3e-06 57.4 236 21.2
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 7.0e-06 57.0 202 23.8
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 7.0e-06 57.0 284 22.5


User provided reference genes

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