Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.4e-42 175.3 98 100.0
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.2e-23 111.7 168 48.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 6.8e-13 77.4 61 68.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.0e-12 75.9 168 36.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.4e-12 75.1 59 69.5
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 3.4e-12 75.1 59 71.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 9.8e-12 73.6 63 63.5
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 9.8e-12 73.6 59 67.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 9.8e-12 73.6 59 67.8
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.8e-12 73.6 65 60.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.8e-12 73.6 65 60.0
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.8e-12 73.6 59 66.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-11 73.2 65 60.0
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.3e-11 73.2 59 67.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.3e-11 73.2 63 65.1
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.3e-11 73.2 59 67.8
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.7e-11 72.8 65 60.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-11 72.8 65 60.0
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-11 72.8 65 60.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.7e-11 72.8 65 60.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.7e-11 72.8 63 65.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.7e-11 72.8 63 65.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.7e-11 72.8 74 56.8
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.7e-11 72.8 59 67.8
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.2e-11 72.4 71 59.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.2e-11 72.4 69 58.0
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.2e-11 72.4 59 67.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.2e-11 72.4 59 67.8
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-11 72.4 105 44.8
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.8e-11 72.0 59 66.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.8e-11 72.0 59 66.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.8e-11 72.0 59 69.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 3.7e-11 71.6 59 66.1
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.7e-11 71.6 65 60.0
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.7e-11 71.6 58 67.2
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 4.8e-11 71.2 59 66.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 4.8e-11 71.2 105 43.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.8e-11 71.2 59 64.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.8e-11 71.2 74 55.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 4.8e-11 71.2 71 54.9
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 6.3e-11 70.9 74 56.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 6.3e-11 70.9 65 61.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 6.3e-11 70.9 63 60.3
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 6.3e-11 70.9 59 64.4
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 6.3e-11 70.9 89 52.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 8.3e-11 70.5 89 53.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.3e-11 70.5 63 63.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 8.3e-11 70.5 63 60.3
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 8.3e-11 70.5 59 66.1
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 8.3e-11 70.5 105 42.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.3e-11 70.5 65 58.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-10 70.1 105 45.7
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-10 70.1 74 55.4
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.1e-10 70.1 105 45.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.4e-10 69.7 65 61.5
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.4e-10 69.7 65 60.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.8e-10 69.3 65 58.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.8e-10 69.3 74 55.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.8e-10 69.3 75 53.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-10 68.9 63 60.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.4e-10 68.9 68 57.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.1e-10 68.6 105 44.8
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.1e-10 68.6 58 63.8
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 3.1e-10 68.6 59 64.4
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.1e-10 68.6 59 62.7
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.1e-10 68.6 65 56.9
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.1e-10 68.2 59 62.7
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 4.1e-10 68.2 59 61.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 4.1e-10 68.2 59 64.4
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 4.1e-10 68.2 63 58.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.1e-10 68.2 69 55.1
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 4.1e-10 68.2 74 54.1
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 5.4e-10 67.8 105 42.9
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 5.4e-10 67.8 63 58.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-10 67.8 63 58.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 5.4e-10 67.8 62 61.3
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 5.4e-10 67.8 62 61.3
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.4e-10 67.8 59 61.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.0e-10 67.4 65 58.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 7.0e-10 67.4 59 62.7
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 7.0e-10 67.4 59 64.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 7.0e-10 67.4 59 64.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 7.0e-10 67.4 105 41.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 9.1e-10 67.0 63 57.1
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.1e-10 67.0 63 60.3
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.1e-10 67.0 63 60.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 9.1e-10 67.0 59 59.3
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.1e-10 67.0 63 58.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 9.1e-10 67.0 105 44.8
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.2e-09 66.6 65 56.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.2e-09 66.6 65 56.9
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.6e-09 66.2 65 56.9
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.6e-09 66.2 59 61.0
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.0e-09 65.9 65 56.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.0e-09 65.9 58 62.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.7e-09 65.5 58 62.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.7e-09 65.5 59 61.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.7e-09 65.5 59 61.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.5e-09 65.1 65 55.4
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.5e-09 65.1 65 55.4
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.5e-09 65.1 62 59.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.5e-09 65.1 59 62.7
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 3.5e-09 65.1 173 32.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 3.5e-09 65.1 173 32.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 7.7e-09 63.9 59 62.7
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 7.7e-09 63.9 59 62.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 7.7e-09 63.9 59 62.7
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-09 63.9 56 60.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.7e-09 63.9 56 60.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.3e-08 63.2 59 57.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.9e-08 62.0 59 57.6
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.9e-08 62.0 59 55.9
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.8e-08 61.6 58 53.4
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 6.5e-08 60.8 58 60.3
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.5e-07 59.7 65 52.3
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 5.5e-07 57.8 82 47.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 7.2e-07 57.4 59 54.2
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.2e-07 57.4 56 55.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.6e-06 56.2 65 47.7
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.1e-06 55.8 65 49.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.1e-06 55.8 65 49.2


User provided reference genes

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