Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb299630 Zea mays HOM05D005161 ORTHO05D006816 6.4e-57 223.8 107 100.0
Zm00001eb299560 Zea mays HOM05D005161 ORTHO05D006816 5.0e-54 214.2 107 94.4
Zm00001eb299590 Zea mays HOM05D005161 ORTHO05D006816 2.7e-47 191.8 103 88.3
Zm00001eb299610 Zea mays HOM05D005161 ORTHO05D006816 2.7e-47 191.8 103 88.3
Zm00001eb440770 Zea mays HOM05D005161 ORTHO05D006816 2.7e-47 191.8 103 88.3
Zm00001eb299120 Zea mays HOM05D005161 ORTHO05D006816 5.2e-43 177.6 103 82.5
Zm00001eb299110 Zea mays HOM05D005161 ORTHO05D006816 5.8e-42 174.1 103 82.5
Zm00001eb298730 Zea mays HOM05D005161 ORTHO05D006816 3.2e-16 88.6 80 53.8
Os07g0115700 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 5.5e-16 87.8 80 48.8
MBI18_g03708_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 2.5e-13 79.0 79 51.9
MBI18_g01409_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 1.3e-12 76.6 79 50.6
MBI18_g18530_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 1.3e-12 76.6 90 42.2
MBI18_g25250_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 1.3e-12 76.6 90 42.2
MBI18_g42473_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 1.8e-11 72.8 89 40.4
QL93p0073_0706 Quercus lobata HOM05D005161 ORTHO05D006816 1.8e-11 72.8 86 46.5
Eucgr.D00810 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.0e-11 71.6 72 48.6
Eucgr.D01501 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.0e-11 71.6 82 42.7
MBI18_g01412_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 5.3e-11 71.2 86 40.7
Zm00001eb118070 Zea mays HOM05D005161 ORTHO05D006816 5.3e-11 71.2 70 47.1
QL04p088669 Quercus lobata HOM05D005161 ORTHO05D006816 6.9e-11 70.9 84 41.7
Eucgr.D01505 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.0e-11 70.5 82 41.5
QL05p075077 Quercus lobata HOM05D005161 ORTHO05D006816 1.2e-10 70.1 79 46.8
MBI18_g32336_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 2.0e-10 69.3 80 43.8
Eucgr.L00330 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.6e-10 68.9 75 44.0
MBI18_g12380_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 2.6e-10 68.9 83 43.4
Zm00001eb299570 Zea mays HOM05D005161 ORTHO05D006816 2.6e-10 68.9 90 47.8
COL.COLO4_31730 Corchorus olitorius HOM05D005161 ORTHO05D006816 3.4e-10 68.6 68 51.5
Eucgr.D00375 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.4e-10 68.6 80 40.0
Eucgr.D00383 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.5e-10 68.2 80 40.0
MBI18_g06807_MAGBIO Magnolia biondii HOM05D005161 ORTHO05D006816 4.5e-10 68.2 77 42.9
QL05p075122 Quercus lobata HOM05D005161 ORTHO05D006816 4.5e-10 68.2 86 45.3
TWI38G1862 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 4.5e-10 68.2 68 47.1
Eucgr.D00357 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.8e-10 67.8 91 36.3
Manes.16G012100 Manihot esculenta HOM05D005161 ORTHO05D006816 7.6e-10 67.4 87 40.2
Eucgr.D01500 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.0e-09 67.0 82 41.5
TWI81G0680 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 1.0e-09 67.0 79 43.0
Os07g0116300 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.3e-09 66.6 89 41.6
Cfa000273 Carpinus fangiana HOM05D005161 ORTHO05D006816 2.2e-09 65.9 80 46.2
Eucgr.D00807 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.2e-09 65.9 70 45.7
Eucgr.D01108 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.9e-09 65.5 78 39.7
Eucgr.D01493 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.8e-09 65.1 75 42.7
Eucgr.D00381 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.9e-09 64.7 81 46.9
Eucgr.D00400 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.9e-09 64.7 83 42.2
Eucgr.D00809 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.9e-09 64.7 74 47.3
Eucgr.D01291 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.9e-09 64.7 86 40.7
Eucgr.D00364 Eucalyptus grandis HOM05D005161 ORTHO05D006816 6.5e-09 64.3 70 50.0
Eucgr.D00117 Eucalyptus grandis HOM05D005161 ORTHO05D006816 8.4e-09 63.9 79 38.0
Eucgr.D00361 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.1e-08 63.5 71 40.8
Eucgr.D01497 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.1e-08 63.5 75 40.0
Eucgr.D00371 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.4e-08 63.2 70 48.6
Eucgr.L00328 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.4e-08 63.2 74 43.2
Eucgr.D00389 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.9e-08 62.8 83 42.2
Eucgr.D01507 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.9e-08 62.8 70 41.4
Eucgr.D00385 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.5e-08 62.4 79 39.2
Eucgr.D01492 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.5e-08 62.4 75 40.0
Eucgr.L00332 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.5e-08 62.4 75 40.0
Eucgr.D00365 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.2e-08 62.0 80 37.5
Eucgr.J02766 Eucalyptus grandis HOM05D000432 ORTHO05D000320 3.2e-08 62.0 75 32.0
Eucgr.D01245 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.2e-08 61.6 71 42.3
Eucgr.D01495 Eucalyptus grandis HOM05D005161 ORTHO05D006816 4.2e-08 61.6 67 44.8
Eucgr.D00380 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.5e-08 61.2 69 42.0
Eucgr.D01478 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.5e-08 61.2 74 39.2
Nn7g37253 Nelumbo nucifera HOM05D000432 ORTHO05D000320 5.5e-08 61.2 73 38.4
Os01g0373500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 5.5e-08 61.2 69 44.9
Os11g0619500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 5.5e-08 61.2 69 42.0
Eucgr.L02157 Eucalyptus grandis HOM05D005161 ORTHO05D006816 7.1e-08 60.8 73 38.4
Eucgr.D00386 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.3e-08 60.5 86 40.7
Eucgr.D00403 Eucalyptus grandis HOM05D005161 ORTHO05D006816 9.3e-08 60.5 86 39.5
Zm00001eb283300 Zea mays HOM05D005161 ORTHO05D006816 9.3e-08 60.5 50 50.0
CSS0048367 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 1.2e-07 60.1 72 43.1
Haze_06742 Corylus avellana HOM05D005161 ORTHO05D006816 1.2e-07 60.1 78 43.6
Eucgr.D00377 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.2e-07 60.1 78 37.2
Eucgr.D00394 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.2e-07 60.1 83 39.8
Eucgr.D01512 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.2e-07 60.1 75 44.0
Eucgr.D00366 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.6e-07 59.7 73 41.1
Eucgr.D01490 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.6e-07 59.7 74 37.8
CSS0011615 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 2.1e-07 59.3 72 43.1
CSS0048321 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 2.1e-07 59.3 72 43.1
Eucgr.D00806 Eucalyptus grandis HOM05D005161 ORTHO05D006816 2.1e-07 59.3 48 52.1
Duzib235G0417 Durio zibethinus HOM05D000432 ORTHO05D000320 2.7e-07 58.9 71 36.6
Lsat_1_v5_gn_6_42360 Lactuca sativa HOM05D000432 ORTHO05D000320 2.7e-07 58.9 73 38.4
Eucgr.D00397 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.5e-07 58.5 70 40.0
Eucgr.D00808 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.5e-07 58.5 72 41.7
Eucgr.D00811 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.5e-07 58.5 70 41.4
Eucgr.J02747 Eucalyptus grandis HOM05D000432 ORTHO05D000320 3.5e-07 58.5 75 29.3
Thecc.06G124600 Theobroma cacao HOM05D000432 ORTHO05D000320 3.5e-07 58.5 71 36.6
QL05p004906 Quercus lobata HOM05D000432 ORTHO05D000320 4.6e-07 58.2 73 35.6
Thecc.06G124300 Theobroma cacao HOM05D000432 ORTHO05D000320 4.6e-07 58.2 71 36.6
Cfa000271 Carpinus fangiana HOM05D005161 ORTHO05D006816 6.0e-07 57.8 50 54.0
Eucgr.D00363 Eucalyptus grandis HOM05D005161 ORTHO05D006816 6.0e-07 57.8 70 41.4
Eucgr.D00368 Eucalyptus grandis HOM05D005161 ORTHO05D006816 6.0e-07 57.8 68 39.7
HanXRQChr14g0430301 Helianthus annuus HOM05D000432 ORTHO05D000320 6.0e-07 57.8 74 39.2
HanXRQChr14g0430321 Helianthus annuus HOM05D000432 ORTHO05D000320 6.0e-07 57.8 73 38.4
Thecc.02G049300 Theobroma cacao HOM05D000432 ORTHO05D000320 6.0e-07 57.8 70 41.4
Dinv31959 Davidia involucrata HOM05D000432 ORTHO05D000320 7.9e-07 57.4 75 34.7
Eucgr.D00393 Eucalyptus grandis HOM05D005161 ORTHO05D006816 7.9e-07 57.4 52 46.2
HanXRQChr08g0216271 Helianthus annuus HOM05D000432 ORTHO05D000320 7.9e-07 57.4 80 37.5
HanXRQChr08g0216411 Helianthus annuus HOM05D000432 ORTHO05D000320 7.9e-07 57.4 80 37.5
TWI63G0153 Tripterygium wilfordii HOM05D005161 ORTHO05D006816 7.9e-07 57.4 68 45.6
Zm00001eb369570 Zea mays HOM05D005161 ORTHO05D006816 7.9e-07 57.4 50 52.0
Eucgr.D00362 Eucalyptus grandis HOM05D005161 ORTHO05D006816 1.0e-06 57.0 63 46.0
Os11g0617700 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.0e-06 57.0 83 41.0
Actinidia31746 Actinidia chinensis HOM05D000432 ORTHO05D000320 1.3e-06 56.6 75 34.7
Nn7g37245 Nelumbo nucifera HOM05D000432 ORTHO05D000320 1.3e-06 56.6 73 37.0
Ciclev10006737m.g Citrus clementina HOM05D000432 ORTHO05D000320 1.8e-06 56.2 83 33.7
Cc00_g32420 Coffea canephora HOM05D000432 ORTHO05D000320 1.8e-06 56.2 73 34.2
Duzib205G1993 Durio zibethinus HOM05D000432 ORTHO05D000320 1.8e-06 56.2 82 32.9
Actinidia05817 Actinidia chinensis HOM05D000432 ORTHO05D000320 2.3e-06 55.8 78 37.2
Ciclev10030709m.g Citrus clementina HOM05D000432 ORTHO05D000320 2.3e-06 55.8 73 32.9
ECA233G2491 Erigeron canadensis HOM05D000432 ORTHO05D000320 2.3e-06 55.8 78 37.2
Os05g0508500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 2.3e-06 55.8 70 41.4
Os10g0450400 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 2.3e-06 55.8 97 33.0
Peaxi162Scf00064g00132 Petunia axillaris HOM05D000432 ORTHO05D000320 2.3e-06 55.8 73 32.9
Solyc12g094650.3 Solanum lycopersicum HOM05D000432 ORTHO05D000320 2.3e-06 55.8 81 30.9
Sopen12g031550 Solanum pennellii HOM05D000432 ORTHO05D000320 2.3e-06 55.8 81 30.9
AagrBONN_evm.TU.Sc2ySwM_117.4118 Anthoceros agrestis HOM05D000432 ORTHO05D006816 3.0e-06 55.5 73 37.0
MSTRG.24923 Avicennia marina HOM05D000432 ORTHO05D000320 3.0e-06 55.5 73 35.6
Ciclev10027429m.g Citrus clementina HOM05D000432 ORTHO05D000320 3.0e-06 55.5 75 28.0
Cc03_g14720 Coffea canephora HOM05D000432 ORTHO05D000320 3.0e-06 55.5 73 32.9
Haze_22824 Corylus avellana HOM05D000432 ORTHO05D000320 3.0e-06 55.5 84 35.7
Duzib235G0164 Durio zibethinus HOM05D000432 ORTHO05D000320 3.0e-06 55.5 50 46.0
Duzib248G0186 Durio zibethinus HOM05D000432 ORTHO05D000320 3.0e-06 55.5 97 29.9
ECA233G5642 Erigeron canadensis HOM05D000432 ORTHO05D000320 3.0e-06 55.5 78 35.9
Eucgr.D00378 Eucalyptus grandis HOM05D005161 ORTHO05D006816 3.0e-06 55.5 71 36.6
Zm00001eb341380 Zea mays HOM05D005161 ORTHO05D006816 3.0e-06 55.5 68 44.1
AL7G35020 Arabidopsis lyrata HOM05D000432 ORTHO05D000320 3.9e-06 55.1 61 41.0
Ciclev10027206m.g Citrus clementina HOM05D000432 ORTHO05D000320 3.9e-06 55.1 74 36.5
ECA238G0814 Erigeron canadensis HOM05D000432 ORTHO05D000320 3.9e-06 55.1 73 34.2
Hma1.2p1_2011F.1_g311020 Hydrangea macrophylla HOM05D000432 ORTHO05D000320 3.9e-06 55.1 85 31.8
Lsat_1_v5_gn_2_841 Lactuca sativa HOM05D000432 ORTHO05D000320 3.9e-06 55.1 74 35.1
BcaNung04017 Brassica carinata HOM05D000432 ORTHO05D000320 5.1e-06 54.7 84 33.3
COL.COLO4_13588 Corchorus olitorius HOM05D000432 ORTHO05D000320 5.1e-06 54.7 72 34.7
ECA238G2807 Erigeron canadensis HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 35.6
ECA238G3645 Erigeron canadensis HOM05D000432 ORTHO05D000320 5.1e-06 54.7 71 36.6
Eucgr.D00360 Eucalyptus grandis HOM05D005161 ORTHO05D006816 5.1e-06 54.7 71 39.4
Eucgr.J02785 Eucalyptus grandis HOM05D000432 ORTHO05D000320 5.1e-06 54.7 79 29.1
Gohir.D05G353900 Gossypium hirsutum HOM05D000432 ORTHO05D000320 5.1e-06 54.7 74 35.1
Potri.003G064200 Populus trichocarpa HOM05D000432 ORTHO05D000320 5.1e-06 54.7 64 37.5
QL02p014881 Quercus lobata HOM05D000432 ORTHO05D000320 5.1e-06 54.7 77 36.4
QL05p006549 Quercus lobata HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 32.9
QL05p006606 Quercus lobata HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 32.9
QL05p006722 Quercus lobata HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 32.9
SalBow7G4364 Salvia bowleyana HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 32.9
PGSC0003DMG400029315 Solanum tuberosum HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 32.9
Thecc.06G012700 Theobroma cacao HOM05D000432 ORTHO05D000320 5.1e-06 54.7 73 39.7
Zm00001eb115180 Zea mays HOM05D005161 ORTHO05D006816 5.1e-06 54.7 79 38.0
AT4G19090 Arabidopsis thaliana HOM05D000432 ORTHO05D000320 6.7e-06 54.3 83 33.7
CSS0026724 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 6.7e-06 54.3 73 32.9
CSS0033145 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 6.7e-06 54.3 73 32.9
CSS0045548 Camellia sinensis var. sinensis HOM05D000432 ORTHO05D000320 6.7e-06 54.3 70 32.9
CANSAT56G2699 Cannabis sativa HOM05D000432 ORTHO05D000320 6.7e-06 54.3 79 34.2
Cfa000323 Carpinus fangiana HOM05D000432 ORTHO05D000320 6.7e-06 54.3 73 32.9
HanXRQChr12g0366541 Helianthus annuus HOM05D000432 ORTHO05D000320 6.7e-06 54.3 74 37.8
HanXRQChr14g0427671 Helianthus annuus HOM05D000432 ORTHO05D000320 6.7e-06 54.3 73 37.0
Os01g0333600 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D037202 6.7e-06 54.3 79 35.4
QL05p005727 Quercus lobata HOM05D000432 ORTHO05D000320 6.7e-06 54.3 73 34.2
Zm00001eb117790 Zea mays HOM05D005161 ORTHO05D006816 6.7e-06 54.3 70 38.6
Cpa.g.sc25.122 Carica papaya HOM05D000432 ORTHO05D000320 8.7e-06 53.9 83 32.5
ECA238G3605 Erigeron canadensis HOM05D000432 ORTHO05D000320 8.7e-06 53.9 73 35.6
Gohir.A11G259800 Gossypium hirsutum HOM05D000432 ORTHO05D000320 8.7e-06 53.9 74 35.1


User provided reference genes

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