Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 3.7e-293 1010.7 498 100.0
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 3.9e-181 638.6 516 66.1
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 5.7e-108 395.6 524 44.3
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 7.7e-105 385.2 510 43.5
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 5.5e-103 379.0 524 42.7
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 2.1e-102 377.1 526 42.8
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 3.0e-101 373.2 534 41.9
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 2.0e-100 370.5 516 40.3
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 4.4e-100 369.4 512 42.0
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 1.1e-98 364.8 525 40.4
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 2.7e-97 360.1 539 40.6
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 4.5e-97 359.4 522 41.2
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.0e-96 358.2 516 40.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 6.5e-96 355.5 508 43.1
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 6.1e-94 349.0 513 39.8
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 8.0e-94 348.6 524 41.8
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 4.4e-92 342.8 515 38.3
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 5.7e-92 342.4 520 39.8
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 5.7e-92 342.4 527 40.6
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.5e-92 342.0 513 39.0
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 9.8e-92 341.7 470 41.7
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.4e-90 337.8 526 39.2
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.2e-89 334.7 518 40.0
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 1.2e-89 334.7 534 38.6
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 2.7e-89 333.6 526 39.5
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 5.9e-89 332.4 514 39.3
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 1.0e-88 331.6 474 40.7
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 1.0e-88 331.6 513 40.2
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.5e-87 327.8 513 39.0
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.9e-87 327.4 517 38.3
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.2e-87 326.6 513 40.2
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 9.4e-87 325.1 508 38.4
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 9.4e-87 325.1 517 38.7
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 9.4e-87 325.1 511 41.5
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.2e-86 324.7 460 40.2
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 1.6e-86 324.3 510 39.8
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 2.1e-86 323.9 514 38.3
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 4.7e-86 322.8 507 40.0
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 4.7e-86 322.8 515 38.8
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 1.4e-85 321.2 510 38.4
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 3.0e-85 320.1 518 36.7
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 4.0e-85 319.7 510 39.2
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.8e-85 318.9 509 38.1
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 2.0e-84 317.4 529 39.1
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 3.4e-84 316.6 510 37.5
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 5.7e-84 315.8 517 38.1
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 9.8e-84 315.1 515 39.2
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.3e-83 314.7 519 38.7
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 1.3e-83 314.7 514 38.9
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.3e-83 314.7 510 38.0
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.1e-82 311.6 462 41.6
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.8e-82 310.8 511 38.2
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 2.4e-82 310.5 647 33.8
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 4.1e-82 309.7 530 38.1
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 7.0e-82 308.9 508 37.6
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.0e-81 307.4 457 40.0
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 2.7e-81 307.0 512 39.5
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 7.7e-81 305.4 503 38.2
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 1.8e-77 294.3 437 38.4
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.3e-77 293.9 481 38.0
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 3.0e-77 293.5 519 37.4
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.0e-77 293.1 521 36.1
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 5.2e-77 292.7 520 37.3
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 1.2e-76 291.6 511 37.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.5e-76 291.2 518 37.3
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 1.3e-75 288.1 497 36.6
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 1.7e-75 287.7 509 36.7
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 2.9e-75 287.0 543 35.5
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 3.7e-75 286.6 523 36.1
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.8e-74 284.3 507 36.3
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.4e-74 283.9 353 47.3
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 3.2e-74 283.5 517 36.6
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 4.1e-74 283.1 498 35.5
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.3e-72 278.1 516 35.7
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.5e-71 273.9 453 39.3
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 2.1e-70 270.8 515 35.9
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.3e-64 251.5 453 37.7
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 1.6e-62 244.6 405 35.8
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 6.2e-62 242.7 372 39.8
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 8.1e-62 242.3 400 38.0
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 4.4e-60 236.5 667 28.0
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 6.0e-57 226.1 506 33.0
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 5.1e-56 223.0 404 36.1
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 6.6e-56 222.6 245 47.3
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 1.6e-54 218.0 400 35.8
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 5.4e-50 203.0 290 43.8
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 4.6e-49 199.9 278 42.1
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 3.9e-48 196.8 507 31.8
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 2.5e-47 194.1 454 30.8
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 4.7e-46 189.9 277 37.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 2.9e-43 180.6 320 36.9
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 3.0e-40 170.6 530 27.4
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.3e-38 165.2 313 34.5
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 8.4e-35 152.5 291 36.1
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.2e-34 150.2 448 27.2
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.3e-32 145.2 535 27.5
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 5.6e-31 139.8 278 34.5
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 2.1e-30 137.9 326 30.7
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 2.1e-30 137.9 130 52.3
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 5.8e-28 129.8 574 23.2
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 4.2e-26 123.6 155 45.2
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 1.3e-24 118.6 158 40.5
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.8e-24 118.2 275 32.4
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.1e-23 115.5 237 34.6
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 4.3e-23 113.6 113 46.0
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 8.1e-22 109.4 134 45.5
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 1.8e-21 108.2 140 42.9
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 1.5e-20 105.1 131 45.8
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 3.2e-18 97.4 102 46.1
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 3.5e-17 94.0 260 32.3
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 1.9e-15 88.2 133 38.3
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 5.3e-13 80.1 133 32.3
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 9.0e-13 79.3 132 34.8
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 1.3e-11 75.5 131 32.1
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 1.9e-10 71.6 137 32.1
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 1.9e-10 71.6 137 32.1
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 7.2e-10 69.7 174 28.7
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 4.3e-07 60.5 115 31.3
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 4.3e-07 60.5 115 31.3
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 4.3e-07 60.5 115 31.3
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 2.2e-06 58.2 66 43.9
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 3.7e-06 57.4 125 25.6


User provided reference genes

Program Settings