Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.1e-225 786.6 488 100.0
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.2e-25 122.1 511 29.5
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.2e-23 114.0 518 27.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 4.2e-23 113.6 519 28.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 9.4e-23 112.5 507 28.4
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.2e-22 112.1 84 66.7
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 1.6e-22 111.7 523 28.9
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.1e-22 111.3 506 27.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 6.1e-22 109.8 501 27.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.0e-21 109.0 518 28.4
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.4e-21 108.6 523 28.5
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.4e-21 108.6 511 30.5
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-21 108.6 503 29.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.8e-21 108.2 528 27.8
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.3e-21 107.8 520 25.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.3e-21 107.8 524 29.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 5.2e-21 106.7 510 27.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.5e-20 102.8 516 26.7
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.5e-20 102.8 521 28.4
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 7.5e-20 102.8 534 26.6
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 9.8e-20 102.4 530 27.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 9.8e-20 102.4 523 26.2
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.3e-19 102.1 515 27.0
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.3e-19 102.1 518 29.9
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.3e-19 102.1 513 26.9
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 3.7e-19 100.5 540 28.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.8e-19 100.1 440 28.9
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 6.3e-19 99.8 518 30.1
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 6.3e-19 99.8 513 27.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 8.3e-19 99.4 539 28.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-18 99.0 530 27.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.8e-18 98.2 519 26.0
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.4e-18 97.8 507 27.4
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.4e-18 97.8 514 26.1
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.1e-18 97.4 434 29.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.1e-18 97.4 513 27.9
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 3.1e-18 97.4 508 26.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 4.1e-18 97.1 524 26.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.4e-18 96.7 524 26.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 9.1e-18 95.9 421 30.6
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.6e-17 95.1 520 26.9
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.0e-17 94.7 515 25.2
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.0e-17 94.7 513 27.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.7e-17 94.4 519 27.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.7e-17 94.4 509 26.3
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.5e-17 93.6 507 25.0
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.5e-17 93.6 506 26.5
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.9e-17 93.2 520 26.5
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 7.7e-17 92.8 520 26.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.0e-16 92.4 524 27.9
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.3e-16 92.0 524 25.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.7e-16 91.7 446 26.2
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.7e-16 91.7 459 29.6
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.6e-16 89.4 526 24.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-15 89.0 501 29.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.1e-15 89.0 531 27.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.1e-15 89.0 520 26.5
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-15 88.6 425 28.0
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.9e-15 88.2 518 25.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.5e-15 87.8 510 28.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 3.2e-15 87.4 516 28.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.2e-15 87.0 415 28.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 4.2e-15 87.0 507 29.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.2e-15 87.0 509 26.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-15 86.7 511 25.8
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 5.5e-15 86.7 510 24.3
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 7.2e-15 86.3 507 27.2
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 7.2e-15 86.3 524 27.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 9.5e-15 85.9 539 28.0
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.5e-15 85.9 517 25.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.6e-14 85.1 527 24.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.8e-14 84.3 518 25.5
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 3.6e-14 84.0 508 24.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.7e-14 83.6 529 25.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 6.1e-14 83.2 428 27.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.1e-14 83.2 533 25.3
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.4e-13 82.0 532 25.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.8e-13 81.6 513 25.5
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.8e-13 81.6 510 24.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.8e-13 81.6 531 26.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.3e-13 81.3 425 33.4
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.3e-13 81.3 425 26.6
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 3.0e-13 80.9 431 27.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.8e-13 79.3 501 25.1
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.8e-13 79.3 485 24.7
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.0e-12 78.2 518 25.5
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.0e-12 78.2 504 25.6
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.6e-12 77.8 109 39.4
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.4e-12 77.4 506 24.1
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 5.7e-12 76.6 533 25.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.7e-11 75.1 104 42.3
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.7e-11 75.1 427 27.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 3.7e-11 73.9 337 29.7
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.9e-11 73.6 440 24.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 8.3e-11 72.8 439 26.0
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-10 72.4 478 25.7
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.1e-10 72.4 516 25.2
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.4e-10 72.0 553 25.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 2.4e-10 71.2 519 24.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.4e-10 71.2 476 23.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-10 70.9 419 25.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.1e-10 70.9 502 25.7
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 5.4e-10 70.1 529 25.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.0e-10 69.7 517 23.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 9.2e-10 69.3 507 24.5
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.6e-09 68.6 427 26.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.0e-09 68.2 336 30.1
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.0e-09 68.2 427 25.3
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.0e-09 68.2 510 23.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.0e-09 68.2 498 24.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.0e-09 68.2 500 22.6
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.7e-09 67.8 449 24.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.7e-09 67.8 492 23.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.5e-09 67.4 419 24.8
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.5e-09 67.0 481 24.5
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-08 65.9 328 28.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.3e-08 65.5 104 38.5
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 3.8e-08 63.9 432 26.2
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.8e-08 63.9 521 25.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 8.6e-08 62.8 331 27.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.9e-07 61.6 445 23.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.9e-07 61.6 293 26.3
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 7.3e-07 59.7 547 22.7
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 7.3e-07 59.7 105 35.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.5e-07 59.3 546 22.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-06 58.9 427 24.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.2e-06 58.9 513 24.8
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-06 58.2 71 43.7
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.8e-06 57.8 101 32.7


User provided reference genes

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