Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.4e-80 300.8 141 100.0
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.1e-78 294.3 140 97.9
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.8e-20 102.4 53 83.0
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.8e-20 101.7 53 81.1
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 4.8e-20 101.7 53 81.1
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.1e-19 100.5 53 81.1
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.8e-19 99.8 53 79.2
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.8e-19 99.8 53 81.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.1e-19 98.6 80 58.8
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.3e-19 98.2 53 79.2
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.3e-19 98.2 53 79.2
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 5.3e-19 98.2 53 79.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 5.3e-19 98.2 53 79.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 79.2
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 79.2
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 77.4
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 77.4
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 77.4
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 6.9e-19 97.8 53 77.4
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 9.1e-19 97.4 53 75.5
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 9.1e-19 97.4 53 75.5
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.2e-18 97.1 53 75.5
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-18 97.1 53 75.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-18 97.1 49 83.7
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-18 96.7 53 77.4
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-18 96.7 53 77.4
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.5e-18 96.7 49 81.6
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.5e-18 96.7 49 81.6
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.5e-18 96.7 49 81.6
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.5e-18 96.7 49 81.6
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.5e-18 96.7 49 81.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.5e-18 96.7 53 77.4
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.5e-18 96.7 53 75.5
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 73.6
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 77.4
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.0e-18 96.3 53 75.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.6e-18 95.9 53 75.5
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.6e-18 95.9 53 73.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 2.6e-18 95.9 49 81.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.6e-18 95.9 49 81.6
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.6e-18 95.9 49 81.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.6e-18 95.9 49 81.6
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 2.6e-18 95.9 53 75.5
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.6e-18 95.9 53 77.4
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-18 95.5 52 78.8
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.4e-18 95.5 53 73.6
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 73.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 73.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 73.6
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 73.6
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.4e-18 95.5 73 61.6
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 77.4
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 77.4
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 3.4e-18 95.5 53 75.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.5e-18 95.1 49 83.7
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 4.5e-18 95.1 53 71.7
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 4.5e-18 95.1 53 73.6
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 4.5e-18 95.1 53 73.6
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-18 94.7 53 75.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 5.9e-18 94.7 73 61.6
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.7e-18 94.4 73 61.6
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 7.7e-18 94.4 53 71.7
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 7.7e-18 94.4 53 71.7
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 7.7e-18 94.4 53 73.6
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 7.7e-18 94.4 53 73.6
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 7.7e-18 94.4 53 75.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.0e-17 94.0 53 73.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-17 94.0 53 71.7
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-17 94.0 49 81.6
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.0e-17 94.0 53 75.5
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-17 94.0 49 79.6
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-17 94.0 49 79.6
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 75.5
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.3e-17 93.6 51 76.5
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 73.6
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 73.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 75.5
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 75.5
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.3e-17 93.6 53 73.6
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.3e-17 93.6 49 79.6
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.3e-17 93.6 49 77.6
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.3e-17 93.6 49 77.6
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.7e-17 93.2 53 75.5
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.7e-17 93.2 53 73.6
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.7e-17 93.2 53 75.5
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.2e-17 92.8 49 79.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 2.2e-17 92.8 53 71.7
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 2.2e-17 92.8 49 79.6
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 2.2e-17 92.8 53 75.5
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.9e-17 92.4 53 73.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.9e-17 92.4 53 71.7
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 2.9e-17 92.4 53 71.7
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 3.8e-17 92.0 53 71.7
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 3.8e-17 92.0 53 71.7
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 3.8e-17 92.0 53 71.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.8e-17 92.0 49 79.6
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.0e-17 91.7 79 54.4
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 6.5e-17 91.3 53 71.7
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 6.5e-17 91.3 49 75.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 6.5e-17 91.3 53 73.6
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 8.5e-17 90.9 53 69.8
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.5e-17 90.9 53 71.7
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.1e-16 90.5 49 75.5
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.1e-16 90.5 49 79.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-16 90.1 49 73.5
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.4e-16 90.1 51 68.6
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.4e-16 90.1 53 67.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.4e-16 90.1 53 71.7
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 2.5e-16 89.4 53 73.6
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 4.2e-16 88.6 53 67.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.3e-14 82.8 47 70.2
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 3.0e-14 82.4 49 63.3
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 3.0e-14 82.4 49 69.4
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 3.0e-14 82.4 53 66.0
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.8e-12 75.9 77 48.1
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 8.2e-12 74.3 47 59.6
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 9.4e-08 60.8 35 74.3
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 9.4e-08 60.8 35 74.3
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 9.4e-08 60.8 35 74.3
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 9.4e-08 60.8 27 92.6
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.2e-07 60.5 35 74.3
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-07 60.1 40 60.0
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-07 59.3 35 71.4
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-07 59.3 35 71.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.0e-06 57.4 35 68.6
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 5.2e-06 55.1 35 68.6


User provided reference genes

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