Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.4e-172 610.1 388 100.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.9e-161 573.2 388 94.1
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.2e-156 555.1 388 92.5
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.6e-133 479.2 388 80.9
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 8.1e-133 478.0 388 75.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 8.1e-133 478.0 388 75.5
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.4e-132 477.2 389 79.9
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.4e-132 477.2 388 75.5
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.8e-132 476.9 388 71.1
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.4e-132 476.5 388 77.8
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 4.0e-132 475.7 388 80.2
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 9.0e-132 474.6 388 79.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 9.0e-132 474.6 388 67.5
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 9.0e-132 474.6 396 66.9
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.5e-131 473.8 388 79.9
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.0e-131 473.4 388 72.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.0e-131 473.4 388 77.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 4.4e-131 472.2 388 73.7
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 7.6e-131 471.5 388 79.1
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.3e-130 470.7 388 79.1
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.7e-130 470.3 388 79.6
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 2.2e-130 469.9 388 79.4
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 2.9e-130 469.5 388 79.1
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 2.9e-130 469.5 388 79.1
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.9e-130 469.5 388 70.4
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.8e-130 469.2 388 78.6
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.9e-130 468.8 388 78.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.4e-130 468.4 388 78.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 8.4e-130 468.0 388 69.6
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.9e-129 466.8 388 74.2
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.4e-129 466.5 388 78.9
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 3.2e-129 466.1 388 77.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 5.4e-129 465.3 389 76.3
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.4e-129 465.3 388 79.6
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 5.4e-129 465.3 388 78.6
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.1e-129 464.9 409 66.5
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 7.1e-129 464.9 388 79.1
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.2e-128 464.2 388 79.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.2e-128 464.2 388 72.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.6e-128 463.8 388 79.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 2.7e-128 463.0 388 79.9
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.7e-128 463.0 388 69.3
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.5e-128 462.6 409 66.3
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.0e-127 461.1 388 78.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.7e-127 460.3 388 78.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.7e-127 460.3 388 78.6
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 3.9e-127 459.1 388 72.9
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.9e-127 459.1 388 79.4
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 5.1e-127 458.8 388 79.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.6e-127 458.4 388 78.4
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 8.7e-127 458.0 408 66.2
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.1e-126 457.6 388 79.1
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.1e-126 457.6 388 68.3
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.5e-126 457.2 388 66.8
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.9e-126 456.8 388 77.6
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.9e-126 456.8 388 78.9
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.9e-126 456.8 388 78.6
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.5e-126 456.4 385 77.7
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 2.5e-126 456.4 388 78.6
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 4.3e-126 455.7 388 79.1
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 4.3e-126 455.7 388 78.1
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 4.3e-126 455.7 388 78.9
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 5.6e-126 455.3 388 69.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 7.4e-126 454.9 388 65.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 9.6e-126 454.5 388 77.8
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.8e-125 453.0 388 78.1
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.4e-124 450.7 388 76.8
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.8e-124 450.3 388 78.6
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 9.0e-124 448.0 388 67.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.6e-123 446.4 389 69.4
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.6e-123 446.4 389 69.4
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.6e-123 446.4 389 69.4
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.8e-123 445.3 389 69.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-122 444.1 389 64.5
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 3.8e-122 442.6 388 77.1
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 4.9e-122 442.2 388 78.4
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.4e-121 440.7 388 70.9
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 4.2e-121 439.1 388 76.5
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 7.1e-121 438.3 388 74.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.9e-118 430.3 388 72.9
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.9e-118 430.3 388 72.9
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.5e-118 429.9 388 72.4
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 5.6e-118 428.7 388 72.7
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 5.6e-118 428.7 388 72.7
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 5.6e-118 428.7 388 72.7
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 5.6e-118 428.7 388 72.7
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 7.4e-118 428.3 403 71.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 4.8e-117 425.6 388 72.9
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 6.2e-117 425.2 388 72.9
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 8.1e-117 424.9 388 72.7
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.1e-116 424.5 388 71.9
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 3.1e-116 422.9 388 72.4
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-115 420.2 388 74.7
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.6e-115 419.9 388 66.5
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 4.5e-115 419.1 388 73.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.0e-114 417.9 388 66.2
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 8.4e-114 414.8 388 74.5
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.9e-113 413.7 425 59.8
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.5e-113 413.3 417 62.1
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 4.2e-113 412.5 388 74.2
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.6e-112 410.6 388 64.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 4.6e-112 409.1 511 58.5
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.3e-111 407.5 347 76.9
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 5.1e-111 405.6 388 63.4
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 2.1e-109 400.2 388 73.2
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 3.7e-109 399.4 388 70.1
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.5e-107 394.0 350 76.6
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 7.6e-107 391.7 388 58.5
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.0e-106 391.3 405 57.0
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 5.1e-103 379.0 441 48.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.7e-103 378.6 390 53.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 2.5e-102 376.7 392 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 3.3e-102 376.3 388 64.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-102 376.3 400 56.8
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 3.3e-102 376.3 400 56.8
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 7.4e-102 375.2 385 63.9
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 9.7e-102 374.8 388 64.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 8.2e-101 371.7 400 56.5
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-100 370.9 414 54.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.8e-100 370.5 366 59.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-97 360.9 426 52.6
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-97 360.5 392 55.6
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-96 356.3 402 51.7
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.1e-94 351.3 405 52.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.8e-93 346.7 391 67.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 8.2e-93 345.1 403 53.8
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.5e-91 340.9 294 76.5
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.0e-90 338.2 385 52.2
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 4.2e-89 332.8 334 62.3
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.1e-88 330.5 400 50.5
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-76 290.4 386 45.1
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.4e-76 290.4 362 51.4
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 1.3e-74 284.6 245 74.7
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 7.2e-73 278.9 387 42.4
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.4e-71 274.6 410 45.9
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 6.8e-71 272.3 198 65.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 6.3e-69 265.8 396 43.2
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 4.2e-65 253.1 253 62.1
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.4e-62 243.0 293 68.3
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 2.4e-60 237.3 384 47.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.1e-57 228.4 248 56.9
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.6e-56 224.6 248 56.5
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 6.8e-55 219.2 189 58.2
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.1e-44 183.3 98 84.7
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-43 181.8 98 83.7
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.6e-43 179.9 294 37.8
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-42 177.6 299 37.8
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.1e-39 167.2 129 64.3
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.0e-39 166.8 385 35.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.2e-39 166.4 117 67.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.4e-36 157.5 83 83.1
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 5.2e-31 139.8 95 69.5
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-31 139.4 99 62.6
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 4.9e-29 133.3 102 62.7
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.0e-26 125.6 185 40.0
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.3e-26 124.4 190 41.1
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 4.7e-24 116.7 135 45.2
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 1.1e-23 115.5 76 72.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.0e-22 111.3 294 35.4
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 3.4e-22 110.5 58 79.3
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.7e-18 95.9 50 76.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 7.3e-17 92.8 120 63.3
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.0e-15 85.9 58 69.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 4.5e-14 83.6 62 56.5
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 5.8e-14 83.2 39 94.9
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.2e-13 81.3 40 90.0
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.9e-13 80.9 74 51.4
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-12 79.0 38 92.1
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 1.9e-12 78.2 155 31.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 7.1e-12 76.3 39 84.6
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.1e-11 74.7 40 80.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.1e-11 74.7 40 80.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.1e-11 74.7 38 84.2
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 4.6e-11 73.6 60 55.0
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 6.7e-10 69.7 49 67.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 2.5e-09 67.8 47 55.3
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 4.3e-09 67.0 34 85.3
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.1e-08 64.7 39 74.4
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.8e-07 61.6 80 40.0
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 3.4e-06 57.4 61 44.3
Cre08.g367650 Chlamydomonas reinhardtii HOM05D009278 ORTHO05D002685 9.9e-06 55.8 41 61.0
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 9.9e-06 55.8 180 23.3
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 9.9e-06 55.8 41 53.7


User provided reference genes

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