Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.2e-65 253.1 133 100.0
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.0e-27 124.8 111 64.0
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.2e-12 77.0 71 59.2
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 7.8e-12 74.3 84 47.6
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.0e-11 73.9 113 44.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.9e-11 72.4 85 52.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.1e-10 70.5 133 36.8
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.9e-10 69.7 118 47.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.9e-10 69.7 128 38.3
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.5e-10 69.3 72 50.0
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.5e-10 69.3 112 40.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.3e-10 68.6 75 52.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.6e-10 68.2 72 48.6
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.6e-10 68.2 118 37.3
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 7.3e-10 67.8 83 47.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 7.3e-10 67.8 97 43.3
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 9.5e-10 67.4 96 47.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 9.5e-10 67.4 72 51.4
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 9.5e-10 67.4 67 52.2
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.5e-10 67.4 114 43.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.2e-09 67.0 129 37.2
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.2e-09 67.0 84 48.8
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.6e-09 66.6 87 44.8
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.6e-09 66.6 114 36.8
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.6e-09 66.6 59 57.6
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.6e-09 66.6 67 50.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.6e-09 66.6 71 53.5
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.6e-09 66.6 96 43.8
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.1e-09 66.2 64 57.8
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 2.1e-09 66.2 111 41.4
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.1e-09 66.2 116 37.9
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.1e-09 66.2 69 52.2
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.1e-09 66.2 114 42.1
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.1e-09 66.2 117 40.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.8e-09 65.9 102 39.2
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.8e-09 65.9 102 45.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.8e-09 65.9 98 42.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.8e-09 65.9 112 39.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.8e-09 65.9 101 42.6
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.6e-09 65.5 82 50.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.6e-09 65.5 82 50.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.6e-09 65.5 96 40.6
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 3.6e-09 65.5 84 44.0
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.6e-09 65.5 111 43.2
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-09 65.5 79 46.8
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 3.6e-09 65.5 86 47.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 3.6e-09 65.5 109 38.5
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.6e-09 65.5 103 40.8
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.6e-09 65.5 96 43.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.7e-09 65.1 72 48.6
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 4.7e-09 65.1 77 46.8
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.7e-09 65.1 113 40.7
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.7e-09 65.1 84 45.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 4.7e-09 65.1 69 47.8
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 4.7e-09 65.1 86 45.3
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.7e-09 65.1 86 47.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 4.7e-09 65.1 75 53.3
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 4.7e-09 65.1 67 50.7
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 4.7e-09 65.1 67 49.3
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 4.7e-09 65.1 66 51.5
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 4.7e-09 65.1 68 55.9
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.1e-09 64.7 71 50.7
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.1e-09 64.7 86 45.3
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 6.1e-09 64.7 59 55.9
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.1e-09 64.7 71 50.7
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.1e-09 64.7 103 41.7
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 6.1e-09 64.7 115 42.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 6.1e-09 64.7 87 43.7
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 6.1e-09 64.7 58 56.9
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.1e-09 64.7 71 50.7
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 6.1e-09 64.7 106 44.3
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 8.0e-09 64.3 90 43.3
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 8.0e-09 64.3 61 52.5
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 8.0e-09 64.3 50 56.0
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.0e-09 64.3 97 41.2
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 8.0e-09 64.3 104 41.3
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 8.0e-09 64.3 111 41.4
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.0e-08 63.9 86 44.2
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.0e-08 63.9 86 44.2
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.0e-08 63.9 86 44.2
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.0e-08 63.9 113 39.8
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.0e-08 63.9 111 40.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.0e-08 63.9 105 44.8
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.0e-08 63.9 59 54.2
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.4e-08 63.5 117 38.5
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-08 63.5 115 40.0
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.4e-08 63.5 90 45.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.4e-08 63.5 76 48.7
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.4e-08 63.5 89 44.9
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-08 63.5 59 55.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.4e-08 63.5 83 47.0
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.4e-08 63.5 55 60.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.4e-08 63.5 102 43.1
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.8e-08 63.2 67 50.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.8e-08 63.2 68 47.1
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.8e-08 63.2 102 39.2
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-08 63.2 103 39.8
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-08 63.2 102 39.2
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-08 63.2 102 39.2
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-08 63.2 97 40.2
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-08 63.2 83 45.8
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.8e-08 63.2 81 49.4
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.8e-08 63.2 109 40.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.8e-08 63.2 111 41.4
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-08 63.2 114 40.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 2.3e-08 62.8 61 50.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.3e-08 62.8 61 50.8
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 2.3e-08 62.8 77 45.5
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 2.3e-08 62.8 86 45.3
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 3.1e-08 62.4 68 47.1
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.1e-08 62.4 86 47.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.1e-08 62.4 104 39.4
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.1e-08 62.4 91 41.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.0e-08 62.0 93 43.0
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 4.0e-08 62.0 103 41.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 4.0e-08 62.0 57 56.1
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.0e-08 62.0 57 56.1
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 4.0e-08 62.0 81 44.4
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.0e-08 62.0 64 51.6
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.0e-08 62.0 59 52.5
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 4.0e-08 62.0 59 52.5
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.0e-08 62.0 65 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 5.2e-08 61.6 71 52.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 5.2e-08 61.6 96 40.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 5.2e-08 61.6 69 50.7
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 6.8e-08 61.2 82 45.1
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.8e-08 61.2 94 42.6
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.8e-08 61.2 102 40.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 6.8e-08 61.2 83 48.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 6.8e-08 61.2 70 50.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 6.8e-08 61.2 57 54.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 8.9e-08 60.8 98 41.8
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 8.9e-08 60.8 100 41.0
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 8.9e-08 60.8 101 42.6
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 8.9e-08 60.8 95 38.9
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 8.9e-08 60.8 78 47.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.5e-07 60.1 82 40.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.5e-07 60.1 82 40.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.5e-07 60.1 82 40.2
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.5e-07 60.1 69 46.4
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.0e-07 59.7 102 42.2
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 2.6e-07 59.3 106 37.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.6e-07 59.3 97 37.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.6e-07 59.3 86 43.0
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.4e-07 58.9 92 43.5
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.5e-07 57.8 93 40.9
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.3e-06 57.0 54 55.6
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.3e-06 57.0 83 45.8
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.2e-06 56.2 53 54.7
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.2e-06 56.2 53 54.7
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.2e-06 56.2 53 54.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.2e-06 56.2 66 48.5
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.9e-06 55.8 55 52.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.7e-06 55.5 53 56.6
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 8.3e-06 54.3 52 59.6


User provided reference genes

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