Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 0.0e+00 2367.0 1271 100.0
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 0.0e+00 1547.3 1274 66.7
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 8.4e-265 917.9 1331 44.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 2.3e-262 909.8 1131 47.8
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 6.9e-259 898.3 1292 44.3
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 9.0e-259 897.9 1153 48.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 9.3e-256 887.9 1056 49.8
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 3.3e-253 879.4 1344 43.4
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 2.8e-252 876.3 983 51.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 4.8e-252 875.5 1326 44.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 9.0e-251 871.3 1317 43.6
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 2.6e-250 869.8 990 50.0
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 5.9e-250 868.6 1175 46.2
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 2.2e-249 866.7 1194 45.8
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 7.9e-247 858.2 1327 42.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 7.9e-247 858.2 1033 49.0
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.8e-246 857.1 1178 45.8
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 3.0e-246 856.3 1257 44.2
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 9.7e-245 851.3 1045 47.9
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.8e-244 849.7 1326 42.8
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 2.8e-244 849.7 1365 42.5
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 4.8e-244 849.0 1048 47.9
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.1e-243 847.8 1130 46.5
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-241 839.7 1333 42.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.4e-240 837.4 1325 42.7
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.4e-240 837.4 1164 45.2
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 1.6e-239 833.9 1300 43.4
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 5.1e-238 828.9 1144 45.0
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 6.7e-238 828.6 1335 41.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 1.5e-237 827.4 1289 42.4
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.3e-236 824.3 1199 44.0
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 2.8e-236 823.2 1312 42.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 3.7e-236 822.8 1109 45.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 3.7e-236 822.8 1245 42.4
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.8e-236 822.4 1328 42.3
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-235 820.8 1131 46.2
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.8e-235 820.5 1135 46.2
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.1e-235 819.3 1328 42.2
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.8e-233 812.8 981 49.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.1e-232 811.2 1320 41.8
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 7.2e-232 808.5 1273 42.3
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 9.4e-232 808.1 1020 46.8
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 2.1e-231 807.0 1312 41.6
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.0e-230 804.7 1237 41.4
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-230 803.9 1233 44.3
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.8e-230 803.9 1006 47.1
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 5.7e-229 798.9 1049 47.4
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 7.4e-229 798.5 1142 44.0
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 9.7e-229 798.1 1198 42.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 9.7e-229 798.1 1125 44.4
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.7e-228 797.3 1175 43.6
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 6.3e-228 795.4 1141 43.6
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.8e-227 793.9 1258 41.7
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 7.0e-227 792.0 1315 39.0
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.2e-226 791.2 1320 41.1
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 3.5e-226 789.6 1368 41.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 4.5e-226 789.3 1125 44.7
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 4.5e-226 789.3 1153 43.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 7.7e-226 788.5 1138 44.8
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 5.0e-225 785.8 1098 44.2
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.1e-224 784.6 1157 43.6
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 1.5e-224 784.3 1326 41.6
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 5.5e-224 782.3 1209 41.9
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 5.5e-224 782.3 1401 40.1
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.2e-223 781.2 1321 41.3
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 3.6e-223 779.6 1142 42.9
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.0e-222 778.1 1075 44.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.4e-222 777.7 1198 42.6
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 2.3e-222 776.9 1166 42.8
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.0e-221 773.9 1138 42.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 3.3e-221 773.1 1142 42.8
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.3e-221 773.1 996 45.6
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 9.7e-221 771.5 1143 42.9
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.8e-220 770.0 1143 43.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.8e-220 770.0 1143 43.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.7e-218 763.5 1188 42.4
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 5.9e-218 762.3 1348 39.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 2.2e-217 760.4 974 46.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 8.0e-215 751.9 1359 39.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 6.8e-214 748.8 1124 41.9
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.2e-213 748.0 1309 40.3
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 2.4e-211 740.3 1150 42.5
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-210 738.0 1342 40.7
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.9e-209 733.4 1032 42.2
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.5e-208 731.1 1231 41.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 4.2e-208 729.6 1203 41.0
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 2.1e-207 727.2 1234 41.6
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 6.1e-207 725.7 1358 38.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.5e-202 709.5 1354 38.3
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.9e-200 704.1 987 44.5
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.1e-199 699.1 976 45.4
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.9e-192 677.6 1161 39.0
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.9e-188 663.7 1174 38.5
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 4.9e-188 662.9 1186 38.7
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 7.0e-187 659.1 1318 37.4
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 6.0e-186 656.0 1210 38.6
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.6e-183 647.9 976 42.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.8e-183 647.1 1061 41.2
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 7.5e-181 639.0 1043 40.7
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.6e-178 631.3 1035 41.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.7e-177 627.9 1158 38.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.0e-173 614.4 951 42.0
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 5.8e-173 612.8 553 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.3e-161 574.3 1053 36.9
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 5.3e-158 563.1 517 56.7
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 6.0e-154 549.7 682 47.1
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.7e-153 546.2 524 54.8
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 2.8e-151 540.8 1168 33.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 4.3e-144 516.9 1005 33.4
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 7.0e-110 403.3 1047 29.2
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-70 273.1 247 58.7
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 8.9e-57 226.9 478 37.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.4e-49 203.0 240 52.1
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.4e-48 198.4 178 55.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-45 188.3 236 44.5
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.3e-43 181.8 154 63.0
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.4e-41 175.6 606 27.1
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 8.7e-36 157.1 134 60.4
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.3e-31 143.3 106 62.3
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 6.0e-29 134.4 234 37.2
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.5e-24 119.8 97 58.8
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-22 113.2 87 59.8
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-21 109.4 118 53.4
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.1e-19 103.6 84 57.1
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 2.8e-18 99.0 121 45.5
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.5e-15 87.4 120 43.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.5e-14 84.7 125 42.4
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.2e-14 84.3 78 59.0
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-12 80.1 115 40.0
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.1e-09 70.5 124 39.5
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.6e-08 65.9 89 38.2
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 6.5e-07 61.2 76 48.7
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.1e-06 60.5 152 32.9
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 7.2e-06 57.8 75 41.3


User provided reference genes

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