Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb295990 Zea mays HOM05D000312 ORTHO05D000221 5.5e-161 570.9 279 100.0
Zm00001eb295980 Zea mays HOM05D000312 ORTHO05D000221 8.0e-59 231.5 314 45.2
Os08g0461100 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 4.4e-25 119.4 191 41.4
Os08g0461800 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.1e-23 114.8 212 34.9
Os08g0461300 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.6e-22 110.9 247 33.2
Os08g0461400 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 6.2e-19 99.0 201 33.8
Os08g0462300 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 6.4e-16 89.0 211 32.2
Rhsim12G0067500 Rhododendron simsii HOM05D000312 ORTHO05D000221 6.0e-14 82.4 295 28.8
Dinv27405 Davidia involucrata HOM05D000312 ORTHO05D000221 2.3e-13 80.5 291 28.2
MSTRG.1307 Avicennia marina HOM05D000312 ORTHO05D000221 2.1e-11 73.9 272 26.8
TAR371G0453 Trochodendron aralioides HOM05D000312 ORTHO05D000221 4.7e-11 72.8 249 26.1
Psat6g025440 Pisum sativum HOM05D000312 ORTHO05D000221 6.2e-11 72.4 264 27.3
Dinv16567 Davidia involucrata HOM05D000312 ORTHO05D000221 1.1e-10 71.6 278 27.3
MBI15_g22822_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000221 1.4e-10 71.2 267 27.3
TAR371G0209 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.4e-10 71.2 333 27.9
Sopen04g001940 Solanum pennellii HOM05D000312 ORTHO05D000221 4.0e-10 69.7 325 25.8
Medtr2g091145 Medicago truncatula HOM05D000312 ORTHO05D000221 6.8e-10 68.9 235 26.8
Cpa.g.sc53.13 Carica papaya HOM05D000312 ORTHO05D000221 1.5e-09 67.8 221 31.2
Nitab4.5_0002312g0130 Nicotiana tabacum HOM05D000312 ORTHO05D000221 2.0e-09 67.4 232 28.9
CAN.G10.6 Capsicum annuum HOM05D000312 ORTHO05D000221 3.4e-09 66.6 219 30.1
Nn4g23616 Nelumbo nucifera HOM05D000312 ORTHO05D000221 5.8e-09 65.9 142 30.3
PGSC0003DMG400002842 Solanum tuberosum HOM05D000312 ORTHO05D000221 7.6e-09 65.5 135 36.3
TAR371G0233 Trochodendron aralioides HOM05D000312 ORTHO05D000221 7.6e-09 65.5 264 25.0
Sopen04g001950 Solanum pennellii HOM05D000312 ORTHO05D000221 9.9e-09 65.1 135 36.3
HanXRQChr07g0186291 Helianthus annuus HOM05D000312 ORTHO05D000221 1.7e-08 64.3 251 24.3
Nitab4.5_0004730g0050 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.7e-08 64.3 240 29.6
QL02p007238 Quercus lobata HOM05D000312 ORTHO05D000221 1.7e-08 64.3 216 27.8
Solyc04g005900.3 Solanum lycopersicum HOM05D000312 ORTHO05D000221 2.2e-08 63.9 135 35.6
Os08g0460800 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 2.9e-08 63.5 177 31.1
Ciclev10001223m.g Citrus clementina HOM05D000312 ORTHO05D000221 3.8e-08 63.2 162 29.0
Actinidia24036 Actinidia chinensis HOM05D000312 ORTHO05D000221 4.9e-08 62.8 216 28.7
Sed0014773 Sechium edule HOM05D000312 ORTHO05D000221 4.9e-08 62.8 226 27.9
MBI15_g27844_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000221 6.4e-08 62.4 214 27.1
TWI75G1896 Tripterygium wilfordii HOM05D000312 ORTHO05D000221 6.4e-08 62.4 246 27.2
Os08g0267800 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 1.9e-07 60.8 256 25.4
Os09g0443000 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D011084 1.9e-07 60.8 50 62.0
Glyma.02G127700 Glycine max HOM05D000312 ORTHO05D000221 2.4e-07 60.5 142 32.4
TAR371G0106 Trochodendron aralioides HOM05D000312 ORTHO05D000221 2.4e-07 60.5 315 23.5
Prupe.1G299200 Prunus persica HOM05D000312 ORTHO05D000221 3.2e-07 60.1 141 32.6
Manes.06G077200 Manihot esculenta HOM05D000312 ORTHO05D000221 7.1e-07 58.9 225 28.9
Medtr1g013580 Medicago truncatula HOM05D000312 ORTHO05D000221 7.1e-07 58.9 164 29.9
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 9.2e-07 58.5 151 33.1
Peaxi162Scf00188g00423 Petunia axillaris HOM05D000312 ORTHO05D000221 9.2e-07 58.5 140 33.6
Peaxi162Scf00369g00812 Petunia axillaris HOM05D000312 ORTHO05D000221 9.2e-07 58.5 137 32.8
Phvul.003G044500 Phaseolus vulgaris HOM05D000312 ORTHO05D000221 9.2e-07 58.5 143 31.5
AUR62023126 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.2e-06 58.2 240 27.1
COL.COLO4_26386 Corchorus olitorius HOM05D000312 ORTHO05D000221 1.2e-06 58.2 164 28.7
Lsat_1_v5_gn_4_16841 Lactuca sativa HOM05D000312 ORTHO05D000221 1.6e-06 57.8 200 25.5
CSS0005039 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000843 2.1e-06 57.4 151 35.1
Cfa008812 Carpinus fangiana HOM05D001046 ORTHO05D002934 2.1e-06 57.4 145 31.0
Lsat_1_v5_gn_4_17000 Lactuca sativa HOM05D000312 ORTHO05D000221 2.1e-06 57.4 167 28.1
MBI19_g37315_MAGBIO Magnolia biondii HOM05D000570 ORTHO05D000221 2.1e-06 57.4 140 32.1
Thecc.08G020800 Theobroma cacao HOM05D000312 ORTHO05D000221 2.1e-06 57.4 164 28.7
vmacro10487 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 2.1e-06 57.4 222 27.9
AUR62041668 Chenopodium quinoa HOM05D000312 ORTHO05D000221 2.7e-06 57.0 221 25.3
Lj4C677G6 Lonicera japonica HOM05D000576 ORTHO05D000368 2.7e-06 57.0 189 28.6
MSTRG.24393 Avicennia marina HOM05D000312 ORTHO05D000221 3.5e-06 56.6 112 36.6
AUR62033859 Chenopodium quinoa HOM05D000312 ORTHO05D000221 3.5e-06 56.6 221 25.3
Duzib268G1818 Durio zibethinus HOM05D000312 ORTHO05D000221 3.5e-06 56.6 223 26.5
Migut.D00672 Erythranthe guttata HOM05D000312 ORTHO05D000221 3.5e-06 56.6 50 56.0
FAN22G1051 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.5e-06 56.6 182 28.0
MBI15_g22823_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000221 3.5e-06 56.6 197 28.9
Os08g0460700 Oryza sativa ssp. japonica HOM05D000312 ORTHO05D000221 3.5e-06 56.6 116 37.9
RhsimUnG0013000 Rhododendron simsii HOM05D022656 ORTHO05D022449 3.5e-06 56.6 256 26.6
Sabra14G0028900 Salix brachista HOM05D000312 ORTHO05D000221 3.5e-06 56.6 164 26.8
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 4.6e-06 56.2 72 43.1
Nitab4.5_0008351g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 4.6e-06 56.2 137 32.8
Sabra14G0028800 Salix brachista HOM05D000312 ORTHO05D000221 4.6e-06 56.2 166 28.3
FAN17G1745 Fragaria x ananassa HOM05D000312 ORTHO05D000221 6.0e-06 55.8 182 27.5
Medtr2g047848 Medicago truncatula HOM05D000312 ORTHO05D000221 6.0e-06 55.8 139 29.5
AL2G16300 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 7.8e-06 55.5 173 28.3
FAN12G3765 Fragaria x ananassa HOM05D000312 ORTHO05D000221 7.8e-06 55.5 182 27.5
MBI15_g27841_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000221 7.8e-06 55.5 181 26.5
MD13G1052800 Malus domestica HOM05D000312 ORTHO05D000221 7.8e-06 55.5 141 32.6
Peaxi162Scf00120g00155 Petunia axillaris HOM05D000312 ORTHO05D000221 7.8e-06 55.5 46 60.9


User provided reference genes

Program Settings