Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 2.8e-291 1004.6 525 100.0
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 2.5e-231 805.4 524 79.0
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 4.0e-144 515.8 516 52.3
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 5.7e-143 511.9 519 51.3
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 5.7e-143 511.9 519 51.3
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 1.3e-139 500.7 519 50.9
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.7e-139 500.4 515 51.8
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 3.9e-139 499.2 515 50.1
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 3.9e-139 499.2 515 51.7
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.6e-139 498.4 529 49.3
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.9e-138 496.9 527 49.1
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 2.5e-138 496.5 518 49.6
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 2.5e-138 496.5 515 50.1
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 3.3e-138 496.1 516 49.6
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 4.3e-138 495.7 519 50.1
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 9.5e-138 494.6 524 49.8
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 1.2e-137 494.2 515 51.5
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 2.1e-137 493.4 516 50.2
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 3.6e-137 492.7 516 49.0
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.4e-136 490.7 527 48.0
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.8e-136 490.3 516 47.1
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 5.2e-136 488.8 522 49.4
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 5.2e-136 488.8 516 48.8
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 6.8e-136 488.4 516 47.1
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 6.8e-136 488.4 515 48.9
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 1.2e-135 487.6 523 49.1
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 4.4e-135 485.7 515 50.5
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 5.8e-135 485.3 516 46.9
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 7.5e-135 485.0 515 50.5
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 1.3e-134 484.2 527 48.0
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 1.3e-134 484.2 515 50.3
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.7e-134 482.6 528 48.7
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 8.3e-134 481.5 527 48.6
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 1.4e-133 480.7 524 47.7
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 1.2e-132 477.6 523 48.9
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 1.2e-132 477.6 527 47.2
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.6e-132 477.2 521 48.2
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 6.0e-132 475.3 515 48.7
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 6.0e-132 475.3 528 48.3
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 3.0e-131 473.0 529 47.8
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.9e-131 472.6 515 48.7
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 6.6e-131 471.9 515 48.3
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 6.6e-131 471.9 530 46.0
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 1.5e-130 470.7 516 48.1
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 1.5e-130 470.7 528 47.9
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 2.5e-130 469.9 517 47.2
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 2.5e-130 469.9 528 46.6
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 7.3e-130 468.4 515 48.3
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 2.1e-129 466.8 515 48.2
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 6.2e-129 465.3 515 48.2
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 1.4e-128 464.2 552 45.7
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 1.8e-128 463.8 527 46.5
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 5.2e-128 462.2 552 45.5
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 1.5e-127 460.7 518 47.5
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 2.0e-127 460.3 564 45.0
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 7.5e-127 458.4 525 45.7
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 1.3e-126 457.6 516 46.5
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.7e-126 457.2 531 46.7
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 3.7e-126 456.1 497 47.3
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 8.3e-126 454.9 528 44.9
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 8.3e-126 454.9 515 47.6
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.1e-124 450.3 527 46.7
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 1.3e-123 447.6 522 46.6
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 2.3e-123 446.8 528 46.2
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 4.3e-122 442.6 527 45.7
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 1.8e-120 437.2 519 44.5
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 2.3e-120 436.8 454 48.7
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 2.6e-119 433.3 521 44.1
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 1.3e-118 431.0 522 44.1
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 1.7e-118 430.6 452 47.1
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 1.1e-117 427.9 519 43.7
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.4e-117 427.6 561 42.4
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 1.4e-117 427.6 633 40.8
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 2.4e-117 426.8 533 43.2
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 3.2e-117 426.4 506 44.9
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 9.2e-117 424.9 506 44.7
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.2e-116 424.5 519 43.5
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 1.2e-116 424.5 519 43.2
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 2.1e-116 423.7 540 44.6
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 7.8e-116 421.8 519 43.5
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 7.3e-114 415.2 523 44.0
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 1.1e-112 411.4 519 43.2
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 9.9e-111 404.8 516 44.0
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 4.9e-110 402.5 563 42.5
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 8.7e-107 391.7 514 44.0
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 2.5e-106 390.2 417 49.4
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 6.2e-105 385.6 447 46.3
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 7.6e-103 378.6 449 45.2
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 4.2e-93 346.3 402 48.8
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 6.0e-92 342.4 390 47.7
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.8e-88 330.9 422 45.3
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.9e-85 320.9 392 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 2.5e-82 310.5 515 37.5
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 2.1e-81 307.4 536 34.9
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 1.1e-80 305.1 406 43.8
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 4.8e-73 279.6 404 43.3
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 2.6e-71 273.9 317 43.2
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 1.9e-69 267.7 317 43.2
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 3.0e-67 260.4 351 44.4
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.1e-66 258.5 291 50.2
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.1e-66 258.5 291 50.2
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 2.0e-66 257.7 519 34.5
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 3.8e-54 216.9 194 58.2
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 4.0e-51 206.8 247 45.3
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 4.8e-49 199.9 221 43.4
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 2.0e-42 177.9 173 54.3
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 2.2e-41 174.5 256 42.6
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 4.8e-41 173.3 456 30.0
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 2.4e-40 171.0 164 56.7
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 5.9e-39 166.4 214 41.1
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 1.2e-34 152.1 171 40.9
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 3.7e-33 147.1 290 35.5
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.2e-28 132.1 125 54.4
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 3.9e-22 110.5 101 47.5
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 7.3e-21 106.3 135 42.2
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 1.2e-20 105.5 105 43.8
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 1.8e-11 75.1 101 40.6
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-10 71.6 136 32.4
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 2.9e-09 67.8 91 37.4


User provided reference genes

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