Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.1e-111 406.8 222 100.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.6e-62 243.4 289 57.1
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 2.6e-52 209.5 161 78.3
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 4.9e-51 205.3 277 54.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 8.3e-43 177.9 235 53.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.0e-40 171.0 201 55.7
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 4.7e-38 162.2 228 52.2
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 8.9e-29 131.3 106 75.5
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.7e-27 127.1 135 61.5
Zm00001eb272130 Zea mays HOM05D004657 ORTHO05D005562 3.8e-27 125.9 84 84.5
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 4.9e-27 125.6 122 66.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 6.4e-19 98.6 243 35.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.4e-18 96.7 243 35.4
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 9.3e-18 94.7 152 42.1
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.2e-17 94.4 126 44.4
Zm00001eb410580 Zea mays HOM05D004657 ORTHO05D005562 2.7e-17 93.2 63 82.5
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 3.5e-17 92.8 123 44.7
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.5e-17 92.8 126 45.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 3.5e-17 92.8 126 44.4
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.5e-17 92.8 243 32.5
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 7.8e-17 91.7 243 32.5
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.8e-17 91.7 243 35.0
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-16 90.9 126 42.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-16 90.9 126 44.4
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.3e-16 90.9 132 47.7
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.7e-16 90.5 243 33.7
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.7e-16 90.5 243 31.7
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.3e-16 90.1 243 33.7
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.3e-16 90.1 243 34.2
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.0e-16 89.7 126 42.9
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 5.1e-16 89.0 240 32.5
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 5.1e-16 89.0 126 44.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.1e-16 89.0 127 42.5
Zm00001eb332080 Zea mays HOM05D004657 ORTHO05D005562 5.1e-16 89.0 70 77.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.6e-16 88.6 250 32.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 6.6e-16 88.6 243 32.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 6.6e-16 88.6 243 32.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 8.7e-16 88.2 123 43.1
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-15 87.8 124 40.3
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-15 87.8 122 40.2
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.5e-15 87.4 125 39.2
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.5e-15 86.7 135 40.7
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-15 86.7 125 42.4
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.5e-15 86.7 121 43.8
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.3e-15 86.3 243 33.7
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.3e-15 86.3 119 44.5
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.3e-15 86.3 243 32.1
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.3e-15 86.3 127 44.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.3e-15 86.3 243 30.9
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.3e-15 86.3 126 41.3
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.3e-15 85.9 123 41.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 4.3e-15 85.9 238 30.7
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 4.3e-15 85.9 243 32.1
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.3e-15 85.9 243 32.9
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.3e-15 85.9 122 41.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.3e-15 85.9 126 42.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.3e-15 85.9 175 43.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.6e-15 85.5 123 44.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 7.3e-15 85.1 239 32.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.6e-15 84.7 135 40.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 9.6e-15 84.7 126 41.3
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-14 84.3 123 40.7
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.6e-14 84.0 140 42.1
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.6e-14 84.0 243 32.1
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.6e-14 84.0 154 39.6
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.1e-14 83.6 126 41.3
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 2.1e-14 83.6 125 43.2
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.8e-14 83.2 126 40.5
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.8e-14 83.2 126 40.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 3.6e-14 82.8 126 41.3
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 3.6e-14 82.8 243 31.7
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.8e-14 82.4 123 42.3
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 4.8e-14 82.4 126 40.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 6.2e-14 82.0 126 40.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 6.2e-14 82.0 126 41.3
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.2e-14 82.0 126 38.1
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 8.1e-14 81.6 126 39.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 8.1e-14 81.6 126 39.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 8.1e-14 81.6 126 39.7
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 8.1e-14 81.6 247 32.8
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 8.1e-14 81.6 132 41.7
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 8.1e-14 81.6 119 42.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-13 81.3 126 39.7
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.1e-13 81.3 126 39.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.1e-13 81.3 243 31.7
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.4e-13 80.9 126 39.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.4e-13 80.9 126 39.7
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.4e-13 80.9 126 39.7
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.4e-13 80.9 126 40.5
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.4e-13 80.9 241 32.4
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.4e-13 80.1 126 38.9
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.4e-13 80.1 246 31.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.4e-13 80.1 126 39.7
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.4e-13 80.1 126 39.7
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.4e-13 80.1 126 39.7
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.4e-13 80.1 244 30.7
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.4e-13 80.1 123 40.7
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.1e-13 79.7 140 39.3
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.1e-13 79.7 154 36.4
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 3.1e-13 79.7 158 34.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 4.0e-13 79.3 126 39.7
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 5.3e-13 79.0 140 38.6
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.3e-13 79.0 140 38.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 5.3e-13 79.0 243 31.3
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.3e-13 79.0 126 39.7
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 5.3e-13 79.0 119 42.9
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 5.3e-13 79.0 262 29.4
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 6.9e-13 78.6 129 38.8
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 6.9e-13 78.6 243 30.9
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 9.0e-13 78.2 140 38.6
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 9.0e-13 78.2 140 38.6
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.5e-12 77.4 118 41.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.5e-12 77.4 126 40.5
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.5e-12 77.4 243 30.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.5e-12 77.4 122 39.3
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 1.5e-12 77.4 155 34.8
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.0e-12 77.0 117 41.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-12 76.3 238 29.4
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.4e-12 76.3 225 29.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 5.8e-12 75.5 115 40.9
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 7.6e-12 75.1 126 38.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.6e-12 75.1 238 29.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.6e-12 75.1 238 30.3
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.9e-12 74.7 126 38.9
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.9e-12 74.7 121 38.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.3e-11 74.3 126 38.9
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.3e-11 74.3 163 31.9
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.2e-11 73.6 244 30.3
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.2e-11 73.6 111 44.1
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 3.8e-11 72.8 117 38.5
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 3.8e-11 72.8 125 35.2
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 4.9e-11 72.4 126 38.1
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.1e-10 71.2 239 31.4
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 9.3e-10 68.2 130 37.7
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.3e-08 63.5 56 48.2
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 8.7e-08 61.6 57 50.9
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 5.6e-07 58.9 142 31.7
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 9.6e-07 58.2 47 57.4
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.3e-06 57.8 52 51.9
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.1e-06 57.0 74 41.9
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 4.8e-06 55.8 107 43.0


User provided reference genes

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