Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 0.0e+00 1224.5 614 100.0
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 4.3e-105 386.3 591 42.5
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 9.4e-28 129.4 536 25.0
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 2.7e-27 127.9 568 26.2
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 6.1e-27 126.7 552 24.5
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 1.1e-25 122.5 564 25.4
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 3.3e-25 120.9 564 25.0
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 1.7e-24 118.6 581 23.8
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 3.7e-24 117.5 563 24.3
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 1.1e-23 115.9 574 24.9
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 2.4e-23 114.8 566 25.3
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 5.3e-23 113.6 557 23.7
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 7.0e-23 113.2 566 25.1
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 9.1e-23 112.8 532 24.6
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 9.1e-23 112.8 535 25.0
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 3.5e-22 110.9 629 24.6
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 7.7e-22 109.8 568 25.7
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 1.3e-21 109.0 590 24.4
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 2.2e-21 108.2 613 22.8
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 2.2e-21 108.2 567 24.2
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 2.9e-21 107.8 570 24.0
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 1.5e-20 105.5 556 25.0
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 3.2e-20 104.4 598 22.7
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 9.4e-20 102.8 563 24.2
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 6.1e-19 100.1 562 23.5
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 8.0e-19 99.8 570 24.0
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 1.4e-18 99.0 553 23.9
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 1.4e-18 99.0 538 23.2
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 1.8e-18 98.6 550 24.2
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 1.8e-18 98.6 546 22.5
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 2.3e-18 98.2 629 21.9
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 4.0e-18 97.4 582 22.3
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 4.0e-18 97.4 586 22.5
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 5.2e-18 97.1 538 23.8
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 6.7e-18 96.7 582 22.3
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.1e-17 95.9 571 23.8
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 1.1e-17 95.9 530 22.8
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 1.5e-17 95.5 551 22.5
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 2.0e-17 95.1 571 24.0
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 5.7e-17 93.6 560 24.6
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 9.7e-17 92.8 600 23.5
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.3e-16 92.4 569 24.3
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 3.7e-16 90.9 567 22.4
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 4.8e-16 90.5 539 22.4
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 4.8e-16 90.5 545 21.5
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 4.8e-16 90.5 591 22.5
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 6.3e-16 90.1 482 23.0
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 8.2e-16 89.7 631 22.5
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 2.4e-15 88.2 557 22.6
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 3.1e-15 87.8 535 22.2
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 3.1e-15 87.8 560 24.5
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 7.0e-15 86.7 529 22.3
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 1.6e-14 85.5 517 22.4
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 1.6e-14 85.5 447 22.6
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 1.6e-14 85.5 523 21.6
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 1.6e-14 85.5 584 21.7
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 3.5e-14 84.3 520 23.1
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 3.5e-14 84.3 642 21.8
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 3.5e-14 84.3 556 21.4
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 4.5e-14 84.0 570 22.6
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 5.9e-14 83.6 516 22.7
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 7.7e-14 83.2 551 22.7
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 1.7e-13 82.0 532 22.4
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 5.0e-13 80.5 513 22.4
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 5.0e-13 80.5 611 20.3
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 5.0e-13 80.5 405 24.0
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 6.5e-13 80.1 631 22.5
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 6.5e-13 80.1 516 21.3
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 8.5e-13 79.7 586 22.9
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 1.5e-12 79.0 620 21.3
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 1.5e-12 79.0 563 22.7
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 1.9e-12 78.6 547 21.8
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 1.9e-12 78.6 531 22.2
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 2.5e-12 78.2 566 22.4
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 4.2e-12 77.4 503 22.3
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 2.1e-11 75.1 573 22.9
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 2.1e-11 75.1 423 24.3
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 2.7e-11 74.7 641 21.5
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 2.7e-11 74.7 639 21.0
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 6.1e-11 73.6 607 21.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 6.1e-11 73.6 607 21.4
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 6.1e-11 73.6 491 20.6
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.4e-10 72.4 461 22.8
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 1.8e-10 72.0 602 21.8
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 3.0e-10 71.2 469 22.4
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 6.8e-10 70.1 469 24.3
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 6.8e-10 70.1 545 21.1
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 2.0e-09 68.6 461 22.8
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 5.7e-09 67.0 568 21.1
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 1.3e-08 65.9 602 20.8
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 2.2e-08 65.1 523 20.7
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 2.8e-08 64.7 577 21.8
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 5.4e-07 60.5 210 27.6


User provided reference genes

Program Settings