Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.8e-129 466.1 267 100.0
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.2e-85 318.2 257 75.1
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.6e-75 284.6 237 73.0
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 4.5e-51 205.7 265 53.6
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.3e-50 204.1 220 59.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.5e-49 199.9 271 50.6
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.2e-49 199.5 222 56.3
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 4.2e-49 199.1 202 58.9
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 9.3e-49 198.0 223 53.8
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.2e-48 197.6 260 48.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.0e-47 194.5 221 54.8
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.8e-47 193.7 236 51.7
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.9e-47 192.6 215 55.8
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 3.9e-47 192.6 224 54.0
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 5.1e-47 192.2 235 50.6
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 8.7e-47 191.4 242 47.9
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.1e-46 191.0 221 55.7
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.9e-46 190.3 209 53.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.9e-46 190.3 227 54.6
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.5e-46 189.9 184 59.2
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.3e-46 189.1 247 50.6
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 5.7e-46 188.7 222 54.1
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.7e-46 188.7 218 53.7
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.3e-45 187.6 210 52.4
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.3e-45 187.6 251 51.0
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-45 187.2 185 57.8
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-45 187.2 270 46.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 2.2e-45 186.8 243 52.3
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.8e-45 185.7 204 56.4
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 6.3e-45 185.3 237 48.5
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.3e-45 185.3 245 46.1
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 6.3e-45 185.3 270 48.1
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 6.3e-45 185.3 217 53.9
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 6.3e-45 185.3 240 50.8
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 6.3e-45 185.3 214 53.3
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.1e-44 184.5 242 50.4
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.1e-44 184.5 259 46.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.4e-44 184.1 242 50.4
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 1.8e-44 183.7 250 50.4
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 3.1e-44 183.0 216 52.8
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.1e-44 182.6 229 52.0
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 5.3e-44 182.2 241 49.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 6.9e-44 181.8 252 45.2
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 6.9e-44 181.8 216 53.7
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 6.9e-44 181.8 251 50.6
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 6.9e-44 181.8 283 44.9
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 9.0e-44 181.4 227 48.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.2e-43 181.0 230 48.7
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.5e-43 180.6 268 46.3
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.0e-43 180.3 271 46.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.6e-43 179.9 216 53.7
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.6e-43 179.9 277 46.9
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 3.4e-43 179.5 207 54.1
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 3.4e-43 179.5 244 49.2
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 4.5e-43 179.1 214 49.5
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 4.5e-43 179.1 217 52.1
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 4.5e-43 179.1 217 52.1
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 4.5e-43 179.1 217 52.1
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 5.9e-43 178.7 187 54.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.9e-43 178.7 245 51.4
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.9e-43 178.7 245 51.0
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.3e-42 177.6 230 48.3
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.7e-42 177.2 235 48.9
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 5.0e-42 175.6 193 56.0
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 6.5e-42 175.3 219 50.7
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 264 46.2
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-41 174.5 206 54.9
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 3.2e-41 172.9 268 45.1
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 7.2e-41 171.8 190 53.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.7e-40 169.9 180 56.7
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.7e-40 169.9 178 59.0
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 6.1e-40 168.7 233 46.4
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.4e-39 167.5 269 42.8
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.9e-39 166.0 253 47.4
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 5.1e-39 165.6 210 49.5
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 8.8e-39 164.9 218 48.6
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-38 164.5 265 43.4
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.5e-38 164.1 211 48.8
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.3e-38 162.9 191 49.2
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 4.3e-38 162.5 223 46.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 6.3e-37 158.7 217 47.5
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 6.3e-37 158.7 246 44.3
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 8.2e-37 158.3 224 44.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.2e-37 158.3 257 42.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-36 157.9 244 45.5
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.1e-36 157.9 244 45.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.1e-36 157.9 163 52.1
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 1.4e-36 157.5 256 44.9
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 2.4e-36 156.8 238 45.4
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.0e-35 153.7 235 42.6
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.6e-35 153.3 274 42.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 5.9e-35 152.1 238 43.3
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 7.7e-35 151.8 179 49.7
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.0e-34 151.4 217 46.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.0e-34 151.4 215 47.4
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.3e-34 151.0 266 42.1
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 2.9e-34 149.8 177 49.7
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.9e-34 149.8 204 45.6
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 5.0e-34 149.1 270 39.3
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 6.5e-34 148.7 246 41.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 6.5e-34 148.7 231 42.4
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 6.5e-34 148.7 261 41.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 8.5e-34 148.3 236 43.2
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-33 147.9 177 48.6
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.1e-33 147.9 177 48.6
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.1e-33 147.9 231 42.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.9e-33 147.1 181 49.7
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.4e-31 141.0 131 60.3
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.3e-31 140.2 221 43.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.9e-31 139.4 221 42.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.5e-30 137.5 285 40.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.7e-29 134.0 131 55.0
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 3.7e-29 132.9 156 55.1
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 8.2e-29 131.7 161 50.3
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-28 131.0 214 43.9
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-28 131.0 146 56.2
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-28 130.2 141 56.0
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 3.1e-28 129.8 231 40.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 5.3e-28 129.0 182 46.2
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 2.6e-27 126.7 149 51.7
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.0e-26 124.8 182 44.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 5.0e-26 122.5 224 39.7
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.1e-25 121.3 120 54.2
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 7.2e-25 118.6 229 38.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-24 117.1 149 47.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 4.7e-24 115.9 187 40.6
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 8.2e-21 105.1 232 34.9
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.4e-20 104.4 125 49.6
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 9.1e-20 101.7 208 38.5
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 7.7e-19 98.6 251 32.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.0e-18 98.2 96 57.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 5.5e-17 92.4 104 51.9
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 7.2e-17 92.0 187 33.7
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 4.7e-16 89.4 168 39.3
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.4e-14 83.2 147 42.9
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 4.8e-13 79.3 74 56.8
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.1e-12 78.2 169 33.1
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.4e-12 77.8 115 48.7
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.1e-12 76.3 104 50.0
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.6e-11 74.3 112 42.0
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 3.5e-11 73.2 70 55.7
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 2.9e-10 70.1 213 31.5
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 3.6e-08 63.2 187 27.8
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 5.7e-06 55.8 62 48.4


User provided reference genes

Program Settings