Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb293770 Zea mays HOM05D006532 ORTHO05D008570 2.9e-163 578.6 307 100.0
Os05g0519800 Oryza sativa ssp. japonica HOM05D006532 ORTHO05D008570 9.8e-143 510.4 318 86.5
Thecc.09G045200 Theobroma cacao HOM05D006532 ORTHO05D008570 7.6e-103 377.9 321 63.9
Gohir.D05G048600 Gossypium hirsutum HOM05D006532 ORTHO05D008570 1.3e-102 377.1 323 65.3
Dinv27901 Davidia involucrata HOM05D006532 ORTHO05D008570 1.7e-102 376.7 259 72.2
Actinidia13336 Actinidia chinensis HOM05D006532 ORTHO05D008570 2.2e-102 376.3 261 70.1
CSS0019039 Camellia sinensis var. sinensis HOM05D006532 ORTHO05D008570 2.9e-102 375.9 268 69.8
FvH4_2g35600 Fragaria vesca HOM05D006532 ORTHO05D008570 2.9e-102 375.9 298 67.8
FAN15G2034 Fragaria x ananassa HOM05D006532 ORTHO05D008570 3.8e-102 375.6 298 67.8
RcHm_v2.0_Chr6g0306211 Rosa chinensis HOM05D006532 ORTHO05D008570 3.8e-102 375.6 322 63.7
FAN27G1267 Fragaria x ananassa HOM05D006532 ORTHO05D008570 8.4e-102 374.4 298 67.4
Gorai.009G049900 Gossypium raimondii HOM05D006532 ORTHO05D008570 8.4e-102 374.4 323 65.0
Oeu038806.1 Olea europaea HOM05D006532 ORTHO05D008570 1.9e-101 373.2 321 62.6
MBI04_g45213_MAGBIO Magnolia biondii HOM05D006532 ORTHO05D008570 2.4e-101 372.9 314 65.6
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 9.3e-101 370.9 266 69.9
Lsat_1_v5_gn_6_23160 Lactuca sativa HOM05D006532 ORTHO05D008570 2.7e-100 369.4 329 61.7
Aqoxy7G03906 Aquilegia oxysepala HOM05D006532 ORTHO05D008570 3.5e-100 369.0 259 70.7
ATR0705G133 Amborella trichopoda HOM05D006532 ORTHO05D008570 4.6e-100 368.6 259 73.0
HPP92_022975 Vanilla planifolia HOM05D006532 ORTHO05D008570 6.0e-100 368.2 321 62.9
Ciclev10008913m.g Citrus clementina HOM05D006532 ORTHO05D008570 1.0e-99 367.5 318 62.9
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 1.0e-99 367.5 259 72.2
Nitab4.5_0003794g0050 Nicotiana tabacum HOM05D006532 ORTHO05D008570 1.3e-99 367.1 321 61.1
MD08G1113700 Malus domestica HOM05D006532 ORTHO05D008570 1.7e-99 366.7 320 62.8
GSVIVG01035625001 Vitis vinifera HOM05D006532 ORTHO05D008570 2.3e-99 366.3 316 62.0
TAR383G0022 Trochodendron aralioides HOM05D006532 ORTHO05D008570 3.0e-99 365.9 316 62.0
CDE02G1820 Ceratophyllum demersum HOM05D006532 ORTHO05D008570 6.6e-99 364.8 312 63.8
HanXRQChr02g0050581 Helianthus annuus HOM05D006532 ORTHO05D008570 6.6e-99 364.8 323 61.9
Sc23g0005260 Simmondsia chinensis HOM05D006532 ORTHO05D008570 6.6e-99 364.8 261 69.7
arahy.Tifrunner.gnm1.ann1.WYW67Z Arachis hypogaea HOM05D006532 ORTHO05D008570 8.7e-99 364.4 303 64.7
THA.LOC104803760 Tarenaya hassleriana HOM05D006532 ORTHO05D008570 1.1e-98 364.0 267 71.2
Migut.A00204 Erythranthe guttata HOM05D006532 ORTHO05D008570 2.5e-98 362.8 315 60.0
Eucgr.C00591 Eucalyptus grandis HOM05D006532 ORTHO05D008570 4.3e-98 362.1 259 70.7
Peaxi162Scf00227g00717 Petunia axillaris HOM05D006532 ORTHO05D008570 4.3e-98 362.1 258 67.4
Solyc08g066640.3 Solanum lycopersicum HOM05D006532 ORTHO05D008570 5.6e-98 361.7 320 60.0
Cpa.g.c24654.2 Carica papaya HOM05D006532 ORTHO05D008570 7.3e-98 361.3 259 71.4
Potri.006G238400 Populus trichocarpa HOM05D006532 ORTHO05D008570 9.6e-98 360.9 259 70.3
Cc08_g09550 Coffea canephora HOM05D006532 ORTHO05D008570 2.1e-97 359.8 320 61.2
Atru.chr7.2089 Acer truncatum HOM05D006532 ORTHO05D008570 3.6e-97 359.0 321 61.1
CAN.G400.2 Capsicum annuum HOM05D006532 ORTHO05D008570 3.6e-97 359.0 259 67.6
Sopen08g020510 Solanum pennellii HOM05D006532 ORTHO05D008570 3.6e-97 359.0 321 59.5
Ah.10g035030 Amaranthus hybridus HOM05D006532 ORTHO05D008570 4.8e-97 358.6 249 70.3
PGSC0003DMG402002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 6.2e-97 358.2 321 59.5
AUR62009283 Chenopodium quinoa HOM05D006532 ORTHO05D008570 8.1e-97 357.8 324 61.4
Manes.16G075600 Manihot esculenta HOM05D006532 ORTHO05D008570 1.8e-96 356.7 259 70.7
CiPaw.07G204300 Carya illinoinensis HOM05D006532 ORTHO05D008570 2.4e-96 356.3 259 69.5
Sabra06G0186500 Salix brachista HOM05D006532 ORTHO05D008570 2.4e-96 356.3 315 61.6
PGR031G1209 Punica granatum HOM05D006532 ORTHO05D008570 4.0e-96 355.5 259 68.3
MSTRG.11698 Avicennia marina HOM05D006532 ORTHO05D008570 6.9e-96 354.8 320 59.7
Hma1.2p1_1138F.1_g260800 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 9.0e-96 354.4 249 71.9
TPR.G15104 Trifolium pratense HOM05D006532 ORTHO05D008570 1.2e-95 354.0 307 61.6
AT2G25830 Arabidopsis thaliana HOM05D006532 ORTHO05D008570 1.5e-95 353.6 293 64.5
Prupe.1G448300 Prunus persica HOM05D006532 ORTHO05D008570 2.6e-95 352.8 317 62.5
AL4G17550 Arabidopsis lyrata HOM05D006532 ORTHO05D008570 4.5e-95 352.1 306 63.4
Carub.0004s0565 Capsella rubella HOM05D006532 ORTHO05D008570 4.5e-95 352.1 306 64.1
Lalb_Chr08g0243051 Lupinus albus HOM05D006532 ORTHO05D008570 4.5e-95 352.1 263 68.4
Rhsim02G0178300 Rhododendron simsii HOM05D006532 ORTHO05D008570 4.5e-95 352.1 302 61.3
QL12p041387 Quercus lobata HOM05D006532 ORTHO05D008570 1.7e-94 350.1 257 69.3
Sed0025155 Sechium edule HOM05D006532 ORTHO05D008570 1.7e-94 350.1 252 69.4
EL10Ac2g04018 Beta vulgaris HOM05D006532 ORTHO05D008570 3.8e-94 349.0 326 59.2
Sp4g05660 Schrenkiella parvula HOM05D006532 ORTHO05D008570 3.8e-94 349.0 259 69.1
CANSAT25G2817 Cannabis sativa HOM05D006532 ORTHO05D008570 6.4e-94 348.2 250 71.2
SalBow4G2374 Salvia bowleyana HOM05D006532 ORTHO05D008570 8.4e-94 347.8 321 58.9
Thhalv10002038m.g Eutrema salsugineum HOM05D006532 ORTHO05D008570 1.1e-93 347.4 259 69.1
TWI63G1016 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 1.1e-93 347.4 263 65.8
A04p20040 Brassica napus HOM05D006532 ORTHO05D008570 1.4e-93 347.1 259 68.0
BolC4t27098H Brassica oleracea HOM05D006532 ORTHO05D008570 1.4e-93 347.1 259 68.0
Cfa013365 Carpinus fangiana HOM05D006532 ORTHO05D008570 1.4e-93 347.1 328 58.5
SGA_v2.0_scaffold75G25009 Striga asiatica HOM05D006532 ORTHO05D008570 1.4e-93 347.1 258 66.7
VMungo1309G2674 Vigna mungo HOM05D006532 ORTHO05D008570 1.9e-93 346.7 301 62.1
C04p55710 Brassica napus HOM05D006532 ORTHO05D008570 2.4e-93 346.3 259 68.0
Nn8g39129 Nelumbo nucifera HOM05D006532 ORTHO05D008570 2.4e-93 346.3 238 73.1
TWI63G0186 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 2.4e-93 346.3 251 68.9
Ca_15592_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 4.2e-93 345.5 307 62.2
vmacro11058 Vaccinium macrocarpon HOM05D006532 ORTHO05D008570 4.2e-93 345.5 334 56.9
Glyma.06G085900 Glycine max HOM05D006532 ORTHO05D008570 5.4e-93 345.1 288 64.2
Phvul.009G109800 Phaseolus vulgaris HOM05D006532 ORTHO05D008570 7.1e-93 344.7 301 62.5
Aa31LG5G9920 Aethionema arabicum HOM05D006532 ORTHO05D008570 1.6e-92 343.6 313 61.3
arahy.Tifrunner.gnm1.ann1.W7W61Q Arachis hypogaea HOM05D006532 ORTHO05D008570 2.1e-92 343.2 346 57.5
Medtr3g109620 Medicago truncatula HOM05D006532 ORTHO05D008570 1.7e-91 340.1 290 62.4
Lj1g0025870 Lotus japonicus HOM05D006532 ORTHO05D008570 3.0e-91 339.3 259 67.2
MELO3C011141.2 Cucumis melo HOM05D006532 ORTHO05D008570 8.7e-91 337.8 252 66.7
Hund19514 Selenicereus undatus HOM05D006532 ORTHO05D008570 1.1e-90 337.4 290 62.8
CsaV3_2G030860 Cucumis sativus L. HOM05D006532 ORTHO05D008570 2.5e-90 336.3 252 65.9
Lj8A581T27 Lonicera japonica HOM05D006532 ORTHO05D008570 1.6e-89 333.6 236 69.9
DCAR_004469 Daucus carota HOM05D006532 ORTHO05D008570 1.4e-88 330.5 293 59.4
ClCG08G012230 Citrullus lanatus HOM05D006532 ORTHO05D008570 2.4e-88 329.7 300 59.0
FAN20G1106 Fragaria x ananassa HOM05D006532 ORTHO05D008570 3.4e-87 325.9 250 67.2
CARHR115400 Cardamine hirsuta HOM05D006532 ORTHO05D008570 1.7e-86 323.6 276 62.7
Nitab4.5_0001894g0020 Nicotiana tabacum HOM05D006532 ORTHO05D008570 2.4e-85 319.7 219 68.9
unitig_748.g7511 Utricularia gibba HOM05D006532 ORTHO05D008570 9.6e-82 307.8 234 62.0
PSO210G1609 Papaver somniferum HOM05D006532 ORTHO05D008570 2.8e-81 306.2 289 58.1
Hund03396 Selenicereus undatus HOM05D006532 ORTHO05D008570 8.1e-81 304.7 262 62.2
AUR62039700 Chenopodium quinoa HOM05D006532 ORTHO05D008570 1.2e-76 290.8 325 53.8
SEGI_00611 Sequoiadendron giganteum HOM05D006532 ORTHO05D008570 1.1e-72 277.7 219 59.4
Duzib168G2121 Durio zibethinus HOM05D006532 ORTHO05D008570 1.5e-71 273.9 251 61.8
Mapoly0061s0140 Marchantia polymorpha HOM05D006532 ORTHO05D008570 7.6e-71 271.6 270 52.6
Eucgr.C00548 Eucalyptus grandis HOM05D006532 ORTHO05D008570 1.4e-69 267.3 184 72.3
Hma1.2p1_1753F.1_g300870 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 3.9e-67 259.2 184 70.7
Glyma.04G084200 Glycine max HOM05D006532 ORTHO05D008570 8.7e-67 258.1 229 58.1
Psat0s1928g0160 Pisum sativum HOM05D006532 ORTHO05D008570 1.1e-64 251.1 236 58.5
AagrBONN_evm.TU.Sc2ySwM_117.144 Anthoceros agrestis HOM05D006532 ORTHO05D008570 9.1e-64 248.1 262 47.7
SMO145G0084 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 2.2e-62 243.4 263 49.0
Pp3c1_5570 Physcomitrium patens HOM05D006532 ORTHO05D008570 8.5e-62 241.5 265 47.2
SMO134G0241 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 1.4e-61 240.7 251 49.4
SMO139G0131 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 1.0e-59 234.6 253 49.0
SMO367G0375 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 3.9e-59 232.6 261 50.2
Haze_21888 Corylus avellana HOM05D006532 ORTHO05D008570 1.7e-57 227.3 258 53.9
CBR_g34330 Chara braunii HOM05D006532 ORTHO05D008570 1.2e-55 221.1 277 45.8
MCO01G189 Micromonas commoda HOM05D006532 ORTHO05D008570 2.1e-44 183.7 249 39.8
Gohir.A05G046832 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.7e-44 183.3 129 70.5
SGA_v2.0_scaffold88G27190 Striga asiatica HOM05D006532 ORTHO05D008570 3.5e-39 166.4 122 65.6
Cre02.g097550 Chlamydomonas reinhardtii HOM05D006532 ORTHO05D008570 2.2e-38 163.7 247 41.3
Gohir.A05G046766 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.0e-34 150.6 163 54.6
PRCOL_00005453 Prasinoderma coloniale HOM05D006532 ORTHO05D008570 1.4e-32 144.4 245 34.3
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.3e-25 121.3 291 34.0
Ca_28981_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 6.1e-20 102.4 243 27.2
Ca_28852_v3 Cicer arietinum L. HOM05D006532 ORTHO05D148468 1.5e-18 97.8 234 30.8
Hund03397 Selenicereus undatus HOM05D006532 ORTHO05D381031 2.3e-06 57.4 32 90.6
SEGI_14321 Sequoiadendron giganteum HOM05D006532 ORTHO05D385294 2.3e-06 57.4 47 63.8


User provided reference genes

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