Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb293640 Zea mays HOM05D000816 ORTHO05D030399 4.2e-93 344.7 181 100.0
Zm00001eb130930 Zea mays HOM05D000816 ORTHO05D030399 5.7e-90 334.3 181 96.7
Zm00001eb232990 Zea mays HOM05D000816 ORTHO05D005265 4.4e-42 175.3 123 82.9
Zm00001eb199440 Zea mays HOM05D000816 ORTHO05D030399 1.5e-37 160.2 102 86.3
Zm00001eb088190 Zea mays HOM05D000816 ORTHO05D005265 1.4e-24 117.1 124 62.1
HPP92_008405 Vanilla planifolia HOM05D000816 ORTHO05D005265 2.6e-18 96.3 107 51.4
HPP92_022627 Vanilla planifolia HOM05D000816 ORTHO05D005265 9.9e-18 94.4 104 54.8
PGR004G1950 Punica granatum HOM05D000816 ORTHO05D005265 8.6e-14 81.3 108 46.3
SGA_v2.0_scaffold79G25664 Striga asiatica HOM05D000816 ORTHO05D005265 1.1e-13 80.9 106 43.4
TWI53G0538 Tripterygium wilfordii HOM05D000816 ORTHO05D005265 1.1e-13 80.9 106 45.3
Prupe.1G034600 Prunus persica HOM05D000816 ORTHO05D005265 1.9e-13 80.1 106 46.2
MBI18_g34564_MAGBIO Magnolia biondii HOM05D000816 ORTHO05D005265 2.5e-13 79.7 106 43.4
Potri.008G164700 Populus trichocarpa HOM05D000816 ORTHO05D005265 2.5e-13 79.7 106 46.2
Dinv44655 Davidia involucrata HOM05D000816 ORTHO05D005265 3.3e-13 79.3 106 44.3
Haze_11333 Corylus avellana HOM05D000816 ORTHO05D005265 5.6e-13 78.6 106 43.4
Lalb_Chr21g0312381 Lupinus albus HOM05D000816 ORTHO05D005265 5.6e-13 78.6 106 42.5
SalBow2G0103 Salvia bowleyana HOM05D000816 ORTHO05D005265 5.6e-13 78.6 106 42.5
Sabra08G0125300 Salix brachista HOM05D000816 ORTHO05D005265 7.3e-13 78.2 106 45.3
Sc19g0003490 Simmondsia chinensis HOM05D000816 ORTHO05D005265 7.3e-13 78.2 103 45.6
MD13G1210100 Malus domestica HOM05D000816 ORTHO05D005265 9.6e-13 77.8 106 44.3
Rhsim04G0188300 Rhododendron simsii HOM05D000816 ORTHO05D005265 9.6e-13 77.8 106 41.5
Lj6g0000947 Lotus japonicus HOM05D000816 ORTHO05D005265 1.2e-12 77.4 106 42.5
Manes.15G038100 Manihot esculenta HOM05D000816 ORTHO05D005265 1.2e-12 77.4 106 43.4
Medtr1g044135 Medicago truncatula HOM05D000816 ORTHO05D005265 1.2e-12 77.4 106 41.5
TPR.G15880 Trifolium pratense HOM05D000816 ORTHO05D005265 1.2e-12 77.4 106 42.5
TWI53G0400 Tripterygium wilfordii HOM05D000816 ORTHO05D005265 1.6e-12 77.0 106 43.4
Cfa008352 Carpinus fangiana HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 43.4
Dinv29888 Davidia involucrata HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 42.5
Migut.N00251 Erythranthe guttata HOM05D000816 ORTHO05D005265 2.1e-12 76.6 107 43.0
FvH4_4g03090 Fragaria vesca HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 44.3
FAN12G0506 Fragaria x ananassa HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 44.3
FAN17G0545 Fragaria x ananassa HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 44.3
Potri.010G074000 Populus trichocarpa HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 45.3
TAR362G0904 Trochodendron aralioides HOM05D000816 ORTHO05D005265 2.1e-12 76.6 106 43.4
unitig_748.g8314 Utricularia gibba HOM05D000816 ORTHO05D005265 2.1e-12 76.6 109 41.3
Glyma.20G202500 Glycine max HOM05D000816 ORTHO05D005265 2.8e-12 76.3 100 42.0
RcHm_v2.0_Chr4g0391361 Rosa chinensis HOM05D000816 ORTHO05D005265 2.8e-12 76.3 106 44.3
GSVIVG01027725001 Vitis vinifera HOM05D000816 ORTHO05D005265 2.8e-12 76.3 106 42.5
QL06p016611 Quercus lobata HOM05D000816 ORTHO05D005265 3.6e-12 75.9 106 42.5
Cpa.g.sc44.92 Carica papaya HOM05D000816 ORTHO05D005265 4.7e-12 75.5 106 44.3
Medtr1g073890 Medicago truncatula HOM05D000816 ORTHO05D005265 4.7e-12 75.5 104 41.3
Phvul.007G272000 Phaseolus vulgaris HOM05D000816 ORTHO05D005265 4.7e-12 75.5 106 41.5
Psat6g105520 Pisum sativum HOM05D000816 ORTHO05D005265 4.7e-12 75.5 106 40.6
SalBow3G1886 Salvia bowleyana HOM05D000816 ORTHO05D005265 4.7e-12 75.5 106 40.6
Atru.chr4.2139 Acer truncatum HOM05D000816 ORTHO05D005265 6.2e-12 75.1 106 43.4
CSS0046882 Camellia sinensis var. sinensis HOM05D000816 ORTHO05D005265 6.2e-12 75.1 106 42.5
CiPaw.01G188100 Carya illinoinensis HOM05D000816 ORTHO05D005265 6.2e-12 75.1 103 42.7
Glyma.20G087700 Glycine max HOM05D000816 ORTHO05D005265 6.2e-12 75.1 106 41.5
Sabra10G0034500 Salix brachista HOM05D000816 ORTHO05D005265 6.2e-12 75.1 106 44.3
CANSAT78G1340 Cannabis sativa HOM05D000816 ORTHO05D005265 8.1e-12 74.7 106 40.6
VMungo0720G0129 Vigna mungo HOM05D000816 ORTHO05D005265 8.1e-12 74.7 106 40.6
DCAR_002336 Daucus carota HOM05D000816 ORTHO05D005265 1.1e-11 74.3 109 39.4
Duzib151G0100 Durio zibethinus HOM05D000816 ORTHO05D005265 1.1e-11 74.3 106 41.5
Lj6P660T15 Lonicera japonica HOM05D000816 ORTHO05D005265 1.1e-11 74.3 106 42.5
Lalb_Chr19g0128421 Lupinus albus HOM05D000816 ORTHO05D005265 1.1e-11 74.3 106 40.6
CDE05G0995 Ceratophyllum demersum HOM05D000816 ORTHO05D005265 1.4e-11 73.9 105 42.9
Migut.G00453 Erythranthe guttata HOM05D000816 ORTHO05D005265 1.4e-11 73.9 106 41.5
Thecc.04G249600 Theobroma cacao HOM05D000816 ORTHO05D005265 1.4e-11 73.9 106 42.5
vmacro08447 Vaccinium macrocarpon HOM05D000816 ORTHO05D005265 1.4e-11 73.9 106 38.7
Ca_05395_v3 Cicer arietinum L. HOM05D000816 ORTHO05D005265 1.8e-11 73.6 106 40.6
Lj5g0006884 Lotus japonicus HOM05D000816 ORTHO05D005265 1.8e-11 73.6 133 37.6
SEGI_09659 Sequoiadendron giganteum HOM05D000816 ORTHO05D005265 1.8e-11 73.6 87 50.6
Ciclev10004611m.g Citrus clementina HOM05D000816 ORTHO05D005265 2.4e-11 73.2 105 43.8
DCAR_030735 Daucus carota HOM05D000816 ORTHO05D005265 2.4e-11 73.2 106 39.6
Glyma.10G008200 Glycine max HOM05D000816 ORTHO05D005265 2.4e-11 73.2 106 41.5
HanXRQChr13g0425491 Helianthus annuus HOM05D000816 ORTHO05D005265 2.4e-11 73.2 103 41.7
Peaxi162Scf00024g00165 Petunia axillaris HOM05D000816 ORTHO05D005265 2.4e-11 73.2 108 43.5
TPR.G26444 Trifolium pratense HOM05D000816 ORTHO05D005265 2.4e-11 73.2 104 40.4
MD16G1213000 Malus domestica HOM05D000816 ORTHO05D005265 3.1e-11 72.8 106 43.4
TAR365G1213 Trochodendron aralioides HOM05D000816 ORTHO05D005265 3.1e-11 72.8 106 42.5
EL10Ac3g05909 Beta vulgaris HOM05D000816 ORTHO05D005265 4.0e-11 72.4 103 38.8
CAN.G793.4 Capsicum annuum HOM05D000816 ORTHO05D005265 4.0e-11 72.4 108 43.5
Lalb_Chr03g0037091 Lupinus albus HOM05D000816 ORTHO05D005265 4.0e-11 72.4 106 41.5
VMungo0720G1782 Vigna mungo HOM05D000816 ORTHO05D005265 4.0e-11 72.4 103 40.8
ATR0680G394 Amborella trichopoda HOM05D000816 ORTHO05D005265 5.2e-11 72.0 107 40.2
AUR62002261 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.2e-11 72.0 103 40.8
Oeu021425.1 Olea europaea HOM05D000816 ORTHO05D005265 5.2e-11 72.0 106 38.7
Psat6g132840 Pisum sativum HOM05D000816 ORTHO05D005265 5.2e-11 72.0 104 42.3
Solyc09g089640.2 Solanum lycopersicum HOM05D000816 ORTHO05D005265 5.2e-11 72.0 108 42.6
Sopen09g032580 Solanum pennellii HOM05D000816 ORTHO05D005265 5.2e-11 72.0 108 42.6
Eucgr.H03141 Eucalyptus grandis HOM05D000816 ORTHO05D005265 6.8e-11 71.6 105 41.9
Ca_09814_v3 Cicer arietinum L. HOM05D000816 ORTHO05D005265 8.9e-11 71.2 133 38.3
PGSC0003DMG400017254 Solanum tuberosum HOM05D000816 ORTHO05D005265 8.9e-11 71.2 108 42.6
COL.COLO4_15825 Corchorus olitorius HOM05D000816 ORTHO05D005265 1.2e-10 70.9 106 41.5
Glyma.10G188300 Glycine max HOM05D000816 ORTHO05D005265 1.2e-10 70.9 103 40.8
Gohir.1Z049384 Gossypium hirsutum HOM05D000816 ORTHO05D005265 1.2e-10 70.9 105 40.0
Gorai.005G048100 Gossypium raimondii HOM05D000816 ORTHO05D005265 1.2e-10 70.9 105 40.0
Sed0013172 Sechium edule HOM05D000816 ORTHO05D005265 1.2e-10 70.9 106 41.5
MSTRG.4115 Avicennia marina HOM05D000816 ORTHO05D005265 1.5e-10 70.5 105 40.0
CSS0011433 Camellia sinensis var. sinensis HOM05D000816 ORTHO05D005265 1.5e-10 70.5 106 40.6
CDE02G1756 Ceratophyllum demersum HOM05D000816 ORTHO05D005265 1.5e-10 70.5 105 41.0
Nitab4.5_0007234g0010 Nicotiana tabacum HOM05D000816 ORTHO05D005265 1.5e-10 70.5 108 41.7
PSO832G0140 Papaver somniferum HOM05D000816 ORTHO05D005265 1.5e-10 70.5 105 40.0
TAR602G0005 Trochodendron aralioides HOM05D000816 ORTHO05D005265 1.5e-10 70.5 89 44.9
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.0e-10 70.1 103 39.8
Cc03_g05100 Coffea canephora HOM05D000816 ORTHO05D005265 2.0e-10 70.1 106 41.5
Duzib052G0569 Durio zibethinus HOM05D000816 ORTHO05D005265 2.0e-10 70.1 106 38.7
Manes.03G167100 Manihot esculenta HOM05D000816 ORTHO05D005265 2.0e-10 70.1 106 41.5
SGA_v2.0_scaffold101G29831 Striga asiatica HOM05D000816 ORTHO05D005265 2.0e-10 70.1 90 41.1
THA.LOC104808608 Tarenaya hassleriana HOM05D000816 ORTHO05D005265 2.0e-10 70.1 106 41.5
Gohir.A09G224900 Gossypium hirsutum HOM05D000816 ORTHO05D005265 2.6e-10 69.7 106 40.6
CiPaw.02G115000 Carya illinoinensis HOM05D000816 ORTHO05D005265 3.4e-10 69.3 106 39.6
Hma1.2p1_0310F.1_g120740 Hydrangea macrophylla HOM05D000816 ORTHO05D005265 3.4e-10 69.3 106 38.7
Lsat_1_v5_gn_3_122300 Lactuca sativa HOM05D000816 ORTHO05D005265 3.4e-10 69.3 106 37.7
ECA233G3387 Erigeron canadensis HOM05D000816 ORTHO05D005265 4.4e-10 68.9 103 38.8
Aqoxy5G00276 Aquilegia oxysepala HOM05D000816 ORTHO05D005265 5.8e-10 68.6 106 39.6
Gorai.006G248400 Gossypium raimondii HOM05D000816 ORTHO05D005265 5.8e-10 68.6 106 39.6
Nitab4.5_0000342g0210 Nicotiana tabacum HOM05D000816 ORTHO05D005265 5.8e-10 68.6 108 39.8
THA.LOC104804745 Tarenaya hassleriana HOM05D000816 ORTHO05D005265 5.8e-10 68.6 103 40.8
MSTRG.9916 Avicennia marina HOM05D000816 ORTHO05D005265 7.6e-10 68.2 106 37.7
AUR62026931 Chenopodium quinoa HOM05D000131 ORTHO05D000086 7.6e-10 68.2 87 41.4
MELO3C031219.2 Cucumis melo HOM05D000816 ORTHO05D005265 7.6e-10 68.2 105 40.0
CsaV3_2G012960 Cucumis sativus L. HOM05D000816 ORTHO05D005265 7.6e-10 68.2 105 40.0
PSO210G2818 Papaver somniferum HOM05D000816 ORTHO05D005265 7.6e-10 68.2 105 39.0
Ah.04g154290 Amaranthus hybridus HOM05D000816 ORTHO05D005265 9.9e-10 67.8 86 41.9
A07p09360 Brassica napus HOM05D000816 ORTHO05D005265 9.9e-10 67.8 84 44.0
Gohir.D09G226700 Gossypium hirsutum HOM05D000816 ORTHO05D005265 9.9e-10 67.8 106 39.6
unitig_747.g21661 Utricularia gibba HOM05D000816 ORTHO05D005265 9.9e-10 67.8 106 36.8
Ah.04g154270 Amaranthus hybridus HOM05D000816 ORTHO05D005265 1.7e-09 67.0 103 38.8
Aa31LG8G9630 Aethionema arabicum HOM05D000816 ORTHO05D005265 2.2e-09 66.6 90 41.1
ClCG06G006830 Citrullus lanatus HOM05D000816 ORTHO05D005265 2.2e-09 66.6 105 39.0
Os05g0406550 Oryza sativa ssp. japonica HOM05D000816 ORTHO05D030399 2.2e-09 66.6 49 69.4
AT3G23160 Arabidopsis thaliana HOM05D000816 ORTHO05D005265 2.9e-09 66.2 107 39.3
BolC7t41936H Brassica oleracea HOM05D000816 ORTHO05D005265 3.8e-09 65.9 84 45.2
Thhalv10020490m.g Eutrema salsugineum HOM05D000816 ORTHO05D005265 3.8e-09 65.9 104 39.4
BraA07t28732Z Brassica rapa HOM05D000816 ORTHO05D005265 4.9e-09 65.5 104 40.4
HanXRQChr03g0092251 Helianthus annuus HOM05D000816 ORTHO05D005265 4.9e-09 65.5 103 38.8
C07p14410 Brassica napus HOM05D000816 ORTHO05D005265 6.4e-09 65.1 84 44.0
DCAR_027291 Daucus carota HOM05D000816 ORTHO05D005265 6.4e-09 65.1 106 38.7
Sp3g20810 Schrenkiella parvula HOM05D000816 ORTHO05D005265 8.4e-09 64.7 104 39.4
AL3G37760 Arabidopsis lyrata HOM05D000816 ORTHO05D005265 1.1e-08 64.3 104 39.4
CARHR099090 Cardamine hirsuta HOM05D000816 ORTHO05D005265 1.1e-08 64.3 104 39.4
SMO358G0669 Selaginella moellendorffii HOM05D000816 ORTHO05D005265 1.4e-08 63.9 100 42.0
BcaB06g26448 Brassica carinata HOM05D000816 ORTHO05D005265 1.9e-08 63.5 84 44.0
Lsat_1_v5_gn_5_71940 Lactuca sativa HOM05D000816 ORTHO05D005265 4.2e-08 62.4 106 35.8
Carub.0003s2337 Capsella rubella HOM05D000816 ORTHO05D005265 9.3e-08 61.2 84 41.7
Pp3c13_14500 Physcomitrium patens HOM05D000816 ORTHO05D005265 2.1e-07 60.1 134 35.1
SEGI_23628 Sequoiadendron giganteum HOM05D000816 ORTHO05D001425 2.7e-07 59.7 87 41.4
PSO063G4601 Papaver somniferum HOM05D000816 ORTHO05D009154 1.0e-06 57.8 87 37.9
Mapoly0061s0047 Marchantia polymorpha HOM05D000816 ORTHO05D005265 1.7e-06 57.0 110 36.4
PSO339G4088 Papaver somniferum HOM05D000816 ORTHO05D009154 3.9e-06 55.8 87 41.4
Pp3c3_15760 Physcomitrium patens HOM05D000816 ORTHO05D005265 6.6e-06 55.1 92 38.0


User provided reference genes

Program Settings