Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.1e-211 738.8 390 100.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.3e-136 490.3 388 71.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.8e-123 445.7 374 70.1
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 3.9e-120 435.6 374 67.9
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.2e-114 416.0 375 65.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.7e-89 333.2 373 51.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.0e-88 331.3 373 52.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 6.7e-88 328.6 371 52.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.1e-87 327.8 369 49.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.3e-87 326.2 370 50.8
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.4e-87 325.1 370 50.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.3e-86 324.3 374 50.5
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.2e-86 323.6 372 50.0
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.8e-86 323.2 373 49.9
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.8e-86 323.2 377 49.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 3.7e-86 322.8 377 49.3
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 3.7e-86 322.8 371 48.5
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.7e-86 322.8 372 49.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 8.2e-86 321.6 377 49.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.1e-85 321.2 388 47.4
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 4.1e-85 319.3 371 49.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.3e-85 318.9 375 49.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.9e-85 318.5 379 49.9
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.2e-84 317.8 388 49.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-84 317.8 372 49.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.0e-84 317.0 380 48.9
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.0e-84 317.0 380 48.2
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-84 317.0 377 49.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 2.0e-84 317.0 364 49.2
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.6e-84 316.6 372 50.3
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-84 316.6 370 49.5
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.4e-84 316.2 377 49.1
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 3.4e-84 316.2 361 49.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.4e-84 316.2 374 49.5
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.9e-84 315.5 371 48.8
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.9e-84 315.5 372 48.9
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 7.7e-84 315.1 369 49.3
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.0e-83 314.7 376 49.7
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.0e-83 314.7 373 48.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.3e-83 314.3 377 49.1
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-83 313.5 377 49.3
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.2e-83 313.5 378 48.4
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.9e-83 313.2 365 50.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.0e-83 312.4 376 49.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 6.5e-83 312.0 371 47.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.5e-83 311.6 370 48.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-82 311.2 375 49.6
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-82 311.2 371 48.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.1e-82 311.2 373 49.3
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.5e-82 310.1 372 48.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.5e-82 310.1 371 49.3
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.5e-82 310.1 382 48.4
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.5e-82 310.1 376 46.8
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.2e-82 309.7 396 46.2
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 5.5e-82 308.9 371 48.5
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 9.4e-82 308.1 373 47.2
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.6e-81 307.4 369 49.6
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.1e-81 307.0 372 48.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.1e-81 307.0 379 49.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 6.1e-81 305.4 382 47.4
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.1e-81 305.4 378 47.1
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 6.1e-81 305.4 378 48.7
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.4e-80 304.3 420 44.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-80 304.3 372 47.3
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.8e-80 303.9 379 49.6
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 3.0e-80 303.1 420 44.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.9e-80 302.8 378 46.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.9e-80 302.8 377 46.4
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 3.9e-80 302.8 379 46.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 5.1e-80 302.4 373 48.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.7e-80 302.0 419 45.1
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.7e-80 302.0 376 46.5
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.8e-80 301.6 372 47.8
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.5e-79 300.8 373 46.4
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 2.0e-79 300.4 372 47.0
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.5e-79 300.1 377 45.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.5e-79 300.1 380 45.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.3e-79 299.7 373 47.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 4.3e-79 299.3 379 47.0
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 9.7e-79 298.1 415 45.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.2e-78 297.0 362 46.1
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.7e-78 296.2 372 47.0
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 6.3e-78 295.4 373 44.2
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.3e-78 295.4 372 47.0
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.3e-78 295.4 410 45.9
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 8.2e-78 295.0 372 46.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 8.2e-78 295.0 371 46.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 8.2e-78 295.0 372 47.0
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 8.2e-78 295.0 371 47.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-77 294.7 369 45.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.1e-77 294.7 419 43.4
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.4e-77 294.3 372 46.8
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-77 294.3 319 50.2
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.4e-77 294.3 420 43.8
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.8e-77 293.9 441 41.5
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.4e-77 293.5 378 45.5
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 3.1e-77 293.1 371 45.3
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.1e-77 293.1 412 45.4
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 4.1e-77 292.7 371 45.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.1e-77 292.7 394 44.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 5.3e-77 292.4 369 45.3
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 9.1e-77 291.6 386 44.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.5e-76 290.8 370 45.7
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-75 287.7 393 46.3
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.2e-75 287.0 378 45.2
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 5.0e-75 285.8 418 43.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 8.5e-75 285.0 405 44.0
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-74 284.3 372 46.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.5e-74 283.5 378 46.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 7.2e-74 282.0 372 45.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 7.2e-74 282.0 372 45.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.6e-73 280.8 381 45.1
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 7.9e-73 278.5 372 45.4
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-72 277.7 380 44.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.3e-72 276.9 338 46.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 6.7e-72 275.4 377 44.6
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-71 274.2 372 45.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.6e-71 273.5 377 45.9
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.4e-69 267.7 281 52.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.4e-69 267.7 374 43.0
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.3e-69 265.8 160 75.0
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 5.3e-69 265.8 161 73.3
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 7.7e-68 261.9 302 46.7
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 5.0e-67 259.2 156 73.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.5e-66 256.9 159 69.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.5e-66 255.8 373 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.7e-65 253.4 161 68.9
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.7e-65 253.4 374 43.9
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-63 247.7 313 45.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 4.8e-62 242.7 175 60.0
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.3e-62 242.3 179 62.0
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.1e-61 240.0 370 42.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.0e-59 235.0 370 41.9
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.3e-59 234.6 370 43.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.3e-59 234.6 168 63.7
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.7e-59 234.2 372 43.0
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.2e-58 229.9 373 41.0
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.4e-58 228.4 274 46.0
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.4e-55 219.9 289 43.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.0e-51 208.4 163 55.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.0e-48 198.4 434 34.1
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.3e-48 197.2 361 36.3
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.5e-47 194.5 187 51.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.8e-37 161.0 320 38.8
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.7e-12 77.4 171 40.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.1e-11 73.2 52 63.5
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.1e-11 73.2 52 63.5
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.1e-11 73.2 52 63.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-10 72.0 52 63.5
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.9e-10 71.2 120 43.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 1.9e-10 71.2 112 43.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 9.6e-10 68.9 50 60.0
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-09 67.4 139 39.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-08 64.3 48 56.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-08 64.3 48 56.2
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-08 64.3 48 56.2
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-07 61.2 105 43.8
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 2.6e-07 60.8 121 39.7
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.8e-07 59.7 166 36.1
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.8e-06 57.0 179 24.6


User provided reference genes

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