Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 9.4e-195 683.3 344 100.0
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.0e-164 583.6 347 84.7
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 2.1e-154 549.3 298 90.6
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 1.8e-153 546.2 311 86.8
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 2.4e-153 545.8 298 89.6
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 3.1e-153 545.4 296 90.9
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 3.1e-153 545.4 298 88.9
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 6.8e-153 544.3 348 80.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 8.9e-153 543.9 288 91.7
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 2.6e-152 542.3 297 89.2
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 9.9e-152 540.4 362 77.3
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.9e-152 540.4 287 90.6
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.3e-151 540.0 308 87.0
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.2e-151 539.3 287 90.2
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 2.2e-151 539.3 308 84.7
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 2.2e-151 539.3 287 90.2
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 2.2e-151 539.3 308 86.0
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 2.2e-151 539.3 283 92.6
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.9e-151 538.9 362 77.1
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.9e-151 538.9 296 87.5
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 3.8e-151 538.5 283 91.9
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 4.9e-151 538.1 308 86.0
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 4.9e-151 538.1 306 86.6
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 6.4e-151 537.7 313 86.3
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 8.4e-151 537.3 298 87.2
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 8.4e-151 537.3 323 82.7
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.4e-150 536.6 308 85.7
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.4e-150 536.6 321 82.2
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.9e-150 536.2 292 90.1
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 2.4e-150 535.8 311 84.9
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 3.2e-150 535.4 314 84.1
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 3.2e-150 535.4 283 90.5
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 4.2e-150 535.0 312 84.9
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 5.4e-150 534.6 300 87.7
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 7.1e-150 534.3 298 86.2
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 9.3e-150 533.9 283 90.8
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 9.3e-150 533.9 299 87.6
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 9.3e-150 533.9 299 86.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.6e-149 533.1 283 91.5
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 1.6e-149 533.1 301 86.0
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 2.1e-149 532.7 298 86.2
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.7e-149 532.3 298 86.2
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 3.5e-149 531.9 327 81.0
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.6e-149 531.6 283 91.9
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 4.6e-149 531.6 283 91.9
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 6.0e-149 531.2 295 87.8
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 6.0e-149 531.2 293 87.4
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 7.8e-149 530.8 293 87.4
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.3e-148 530.0 318 83.0
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.3e-148 530.0 350 78.6
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.7e-148 529.6 283 91.2
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.7e-148 529.6 283 90.8
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.3e-148 529.3 312 85.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 2.3e-148 529.3 283 90.5
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.9e-148 528.5 327 81.0
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.1e-147 526.9 355 78.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.1e-147 526.9 296 86.8
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.5e-147 526.6 297 86.5
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.9e-147 526.2 296 87.5
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 2.5e-147 525.8 292 88.0
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 3.3e-147 525.4 351 78.3
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 4.3e-147 525.0 296 86.5
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 5.6e-147 524.6 308 85.1
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 7.3e-147 524.2 357 76.2
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 9.6e-147 523.9 349 77.7
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.6e-146 523.1 285 88.4
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 1.6e-146 523.1 349 77.4
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 2.1e-146 522.7 299 86.6
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 3.6e-146 521.9 310 83.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 4.8e-146 521.5 298 85.6
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 1.1e-145 520.4 285 88.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.1e-145 520.4 305 84.3
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 5.3e-145 518.1 357 75.4
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 7.6e-144 514.2 354 75.7
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 9.9e-144 513.8 354 75.7
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.4e-142 510.0 307 79.8
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.4e-142 510.0 302 81.1
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 5.4e-142 508.1 310 80.6
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 7.1e-142 507.7 302 80.8
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 9.3e-142 507.3 349 75.1
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 2.7e-141 505.8 356 74.4
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.5e-141 505.4 289 86.2
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 7.9e-141 504.2 294 83.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 8.1e-138 494.2 310 77.1
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.5e-136 488.4 258 91.5
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.7e-135 486.5 298 81.9
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 4.9e-135 485.0 263 89.4
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 1.1e-134 483.8 285 82.1
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 4.2e-134 481.9 308 76.9
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 6.0e-133 478.0 336 74.4
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.3e-132 476.1 271 85.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 5.1e-132 474.9 304 73.0
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.9e-131 473.0 310 78.1
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 5.6e-131 471.5 278 84.5
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 2.1e-130 469.5 309 73.5
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 4.5e-128 461.8 282 81.6
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.9e-126 456.4 287 79.4
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.1e-125 453.0 256 85.2
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 2.5e-123 446.0 233 92.7
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.3e-123 445.7 235 90.6
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.3e-123 445.7 235 90.6
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 4.1e-121 438.7 305 74.8
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 4.5e-120 435.3 283 79.2
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 1.7e-119 433.3 332 64.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 5.5e-118 428.3 233 88.4
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 6.1e-117 424.9 289 70.2
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.6e-104 382.9 283 71.7
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 3.8e-103 379.0 294 70.1
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 8.5e-95 351.3 292 56.8
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 7.0e-89 331.6 180 87.8
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.2e-79 300.1 226 67.7
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.7e-74 283.9 233 64.8
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 3.8e-71 272.7 299 46.8
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 4.7e-53 212.6 287 43.2
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 4.9e-50 202.6 290 41.0
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 9.2e-49 198.4 147 74.8
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.7e-42 176.4 295 36.3
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 3.2e-41 173.3 309 35.9
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 6.0e-40 169.1 96 88.5
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 6.8e-36 155.6 82 89.0
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.5e-35 154.5 357 31.9
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.6e-35 153.7 76 93.4
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-33 147.9 309 30.7
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.0e-20 103.2 51 82.4
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 2.5e-14 84.0 45 95.6
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 6.5e-10 69.3 158 31.6
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 64.7 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 64.7 37 86.5


User provided reference genes

Program Settings