Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb292580 Zea mays HOM05D004273 ORTHO05D005041 2.6e-59 231.9 121 100.0
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 9.8e-14 80.5 41 97.6
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 4.9e-13 78.2 41 90.2
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 1.9e-12 76.3 41 85.4
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 2.5e-09 65.9 41 75.6
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 3.3e-09 65.5 41 73.2
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 3.3e-09 65.5 41 73.2
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 7.3e-09 64.3 41 75.6
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 9.5e-09 63.9 41 73.2
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 9.5e-09 63.9 41 73.2
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 9.5e-09 63.9 41 73.2
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 9.5e-09 63.9 41 73.2
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 9.5e-09 63.9 41 70.7
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 70.7
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 70.7
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 70.7
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 70.7
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 73.2
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 73.2
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 1.2e-08 63.5 41 70.7
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 1.6e-08 63.2 41 70.7
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 1.6e-08 63.2 41 70.7
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 70.7
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 70.7
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 70.7
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 70.7
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 73.2
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 65.9
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 65.9
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 70.7
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 65.9
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 2.1e-08 62.8 41 65.9
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 73.2
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 2.8e-08 62.4 41 68.3
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 3.6e-08 62.0 41 68.3
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 3.6e-08 62.0 41 65.9
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 3.6e-08 62.0 41 70.7
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 3.6e-08 62.0 41 68.3
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 6.2e-08 61.2 41 68.3
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 6.2e-08 61.2 40 72.5
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 8.1e-08 60.8 41 70.7
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 8.1e-08 60.8 41 70.7
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.1e-07 60.5 41 68.3
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.1e-07 60.5 41 70.7
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 1.1e-07 60.5 41 70.7
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 1.1e-07 60.5 41 70.7
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.4e-07 60.1 41 68.3
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 1.4e-07 60.1 41 68.3
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 1.4e-07 60.1 41 68.3
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 1.4e-07 60.1 41 68.3
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 65.9
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 65.9
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 68.3
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 68.3
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 65.9
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.8e-07 59.7 41 63.4
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 3.1e-07 58.9 41 63.4
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 3.1e-07 58.9 41 63.4
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 4.0e-07 58.5 41 63.4
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 4.0e-07 58.5 41 65.9
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 4.0e-07 58.5 40 70.0
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 5.2e-07 58.2 41 68.3
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 5.2e-07 58.2 41 58.5
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 6.8e-07 57.8 41 65.9
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 6.8e-07 57.8 41 63.4
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 8.9e-07 57.4 40 67.5
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 58.5
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 58.5
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 58.5
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 58.5
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 65.9
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 8.9e-07 57.4 41 63.4
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.2e-06 57.0 41 65.9
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 1.2e-06 57.0 41 61.0
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 1.2e-06 57.0 41 61.0
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.5e-06 56.6 40 65.0
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 2.0e-06 56.2 41 63.4
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.6e-06 55.8 44 56.8
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 2.6e-06 55.8 41 61.0
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 2.6e-06 55.8 41 61.0
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 2.6e-06 55.8 41 61.0
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 3.4e-06 55.5 41 61.0
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 3.4e-06 55.5 41 65.9
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 4.4e-06 55.1 41 58.5
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 4.4e-06 55.1 41 61.0
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 5.8e-06 54.7 41 61.0
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.8e-06 54.7 41 56.1
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 5.8e-06 54.7 41 61.0
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 5.8e-06 54.7 41 58.5
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 7.6e-06 54.3 41 58.5
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 7.6e-06 54.3 41 63.4
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 7.6e-06 54.3 40 62.5
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 9.9e-06 53.9 41 63.4
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 9.9e-06 53.9 41 58.5


User provided reference genes

Program Settings