Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb291660 Zea mays HOM05D005503 ORTHO05D008949 3.1e-69 265.0 134 100.0
Os05g0496000 Oryza sativa ssp. japonica HOM05D005503 ORTHO05D008949 8.0e-33 144.1 133 58.6
ATR0721G098 Amborella trichopoda HOM05D005503 ORTHO05D008949 1.1e-18 97.1 82 61.0
VMungo1383G2568 Vigna mungo HOM05D005503 ORTHO05D008949 3.3e-18 95.5 72 65.3
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 5.6e-18 94.7 84 63.1
MBI13_g26145_MAGBIO Magnolia biondii HOM05D005503 ORTHO05D008949 5.6e-18 94.7 120 50.8
Aqoxy2G00233 Aquilegia oxysepala HOM05D005503 ORTHO05D008949 2.1e-17 92.8 66 65.2
Lalb_Chr20g0115621 Lupinus albus HOM05D005503 ORTHO05D008949 2.8e-17 92.4 86 59.3
TPR.G7098 Trifolium pratense HOM05D005503 ORTHO05D008949 2.8e-17 92.4 91 54.9
Ca_22958_v3 Cicer arietinum L. HOM05D005503 ORTHO05D008949 4.7e-17 91.7 63 69.8
Glyma.03G133400 Glycine max HOM05D005503 ORTHO05D008949 4.7e-17 91.7 74 62.2
Glyma.19G135200 Glycine max HOM05D005503 ORTHO05D008949 4.7e-17 91.7 74 62.2
Phvul.001G128900 Phaseolus vulgaris HOM05D005503 ORTHO05D008949 4.7e-17 91.7 67 65.7
arahy.Tifrunner.gnm1.ann1.BJA8E7 Arachis hypogaea HOM05D005503 ORTHO05D008949 6.2e-17 91.3 83 61.4
Lj1g0008024 Lotus japonicus HOM05D005503 ORTHO05D008949 6.2e-17 91.3 67 65.7
Rhsim03G0032200 Rhododendron simsii HOM05D005503 ORTHO05D008949 8.1e-17 90.9 93 54.8
Ah.13g077080 Amaranthus hybridus HOM05D005503 ORTHO05D008949 1.1e-16 90.5 70 62.9
Carub.0006s0293 Capsella rubella HOM05D005503 ORTHO05D008949 1.1e-16 90.5 82 59.8
Nn2g15105 Nelumbo nucifera HOM05D005503 ORTHO05D008949 1.1e-16 90.5 133 42.9
Oeu033023.1 Olea europaea HOM05D005503 ORTHO05D008949 1.4e-16 90.1 81 56.8
Lalb_Chr20g0110371 Lupinus albus HOM05D005503 ORTHO05D008949 1.8e-16 89.7 84 58.3
Psat3g074800 Pisum sativum HOM05D005503 ORTHO05D008949 1.8e-16 89.7 63 68.3
Prupe.7G052400 Prunus persica HOM05D005503 ORTHO05D008949 1.8e-16 89.7 127 42.5
PGR004G2205 Punica granatum HOM05D005503 ORTHO05D008949 1.8e-16 89.7 64 65.6
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 2.3e-16 89.4 64 70.3
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 2.3e-16 89.4 64 70.3
CSS0039750 Camellia sinensis var. sinensis HOM05D005503 ORTHO05D008949 2.3e-16 89.4 66 66.7
Sp6g38760 Schrenkiella parvula HOM05D005503 ORTHO05D008949 2.3e-16 89.4 64 68.8
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 3.1e-16 89.0 64 70.3
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 3.1e-16 89.0 61 72.1
MELO3C009814.2 Cucumis melo HOM05D005503 ORTHO05D008949 4.0e-16 88.6 65 61.5
CsaV3_3G040800 Cucumis sativus L. HOM05D005503 ORTHO05D008949 4.0e-16 88.6 65 61.5
Thhalv10016002m.g Eutrema salsugineum HOM05D005503 ORTHO05D008949 4.0e-16 88.6 64 68.8
Hma1.2p1_0110F.1_g052960 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 6.8e-16 87.8 109 48.6
Manes.09G011000 Manihot esculenta HOM05D005503 ORTHO05D008949 6.8e-16 87.8 125 43.2
Potri.006G047800 Populus trichocarpa HOM05D005503 ORTHO05D008949 6.8e-16 87.8 70 57.1
Sed0013086 Sechium edule HOM05D005503 ORTHO05D008949 6.8e-16 87.8 62 64.5
TWI77G0247 Tripterygium wilfordii HOM05D005503 ORTHO05D008949 6.8e-16 87.8 112 45.5
TAR636G0173 Trochodendron aralioides HOM05D005503 ORTHO05D008949 6.8e-16 87.8 64 65.6
COL.COLO4_36524 Corchorus olitorius HOM05D005503 ORTHO05D008949 8.9e-16 87.4 65 58.5
FAN02G3508 Fragaria x ananassa HOM05D005503 ORTHO05D008949 8.9e-16 87.4 116 45.7
Gohir.D09G116600 Gossypium hirsutum HOM05D005503 ORTHO05D008949 8.9e-16 87.4 65 61.5
Gorai.006G134900 Gossypium raimondii HOM05D005503 ORTHO05D008949 8.9e-16 87.4 65 61.5
Atru.chr1.1203 Acer truncatum HOM05D005503 ORTHO05D008949 1.2e-15 87.0 61 67.2
Cpa.g.sc1079.1 Carica papaya HOM05D005503 ORTHO05D008949 1.2e-15 87.0 123 43.9
FvH4_6g24610 Fragaria vesca HOM05D005503 ORTHO05D008949 1.2e-15 87.0 125 44.0
FAN14G5504 Fragaria x ananassa HOM05D005503 ORTHO05D008949 1.2e-15 87.0 125 44.0
Lsat_1_v5_gn_9_32141 Lactuca sativa HOM05D005503 ORTHO05D008949 1.5e-15 86.7 119 46.2
ClCG10G015610 Citrullus lanatus HOM05D005503 ORTHO05D008949 2.0e-15 86.3 67 58.2
GSVIVG01005042001 Vitis vinifera HOM05D005503 ORTHO05D008949 2.0e-15 86.3 64 65.6
Aa31LG1G21320 Aethionema arabicum HOM05D005503 ORTHO05D008949 2.6e-15 85.9 124 44.4
AL6G13590 Arabidopsis lyrata HOM05D005503 ORTHO05D008949 2.6e-15 85.9 64 68.8
MD12G1083400 Malus domestica HOM05D005503 ORTHO05D008949 2.6e-15 85.9 128 43.0
Dinv39668 Davidia involucrata HOM05D005503 ORTHO05D008949 3.4e-15 85.5 123 43.9
Medtr7g090930 Medicago truncatula HOM05D005503 ORTHO05D008949 3.4e-15 85.5 119 43.7
vmacro21945 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 3.4e-15 85.5 122 41.0
arahy.Tifrunner.gnm1.ann1.Z9GIA8 Arachis hypogaea HOM05D005503 ORTHO05D008949 4.4e-15 85.1 117 45.3
Haze_19781 Corylus avellana HOM05D005503 ORTHO05D008949 4.4e-15 85.1 116 45.7
DCAR_020514 Daucus carota HOM05D005503 ORTHO05D008949 4.4e-15 85.1 64 64.1
RcHm_v2.0_Chr3g0483941 Rosa chinensis HOM05D005503 ORTHO05D008949 4.4e-15 85.1 119 42.9
FAN05G5816 Fragaria x ananassa HOM05D005503 ORTHO05D008949 5.8e-15 84.7 116 43.1
Sabra06G0033300 Salix brachista HOM05D005503 ORTHO05D008949 5.8e-15 84.7 70 55.7
Solyc04g016420.3 Solanum lycopersicum HOM05D005503 ORTHO05D008949 5.8e-15 84.7 70 55.7
Sopen04g008520 Solanum pennellii HOM05D005503 ORTHO05D008949 5.8e-15 84.7 70 55.7
PGSC0003DMG400012701 Solanum tuberosum HOM05D005503 ORTHO05D008949 5.8e-15 84.7 70 55.7
AT5G04000 Arabidopsis thaliana HOM05D005503 ORTHO05D008949 7.6e-15 84.3 77 59.7
AUR62024521 Chenopodium quinoa HOM05D005503 ORTHO05D008949 7.6e-15 84.3 61 65.6
HPP92_027974 Vanilla planifolia HOM05D005503 ORTHO05D008949 7.6e-15 84.3 72 56.9
CARHR209280 Cardamine hirsuta HOM05D005503 ORTHO05D008949 9.9e-15 84.0 64 64.1
Hund24647 Selenicereus undatus HOM05D005503 ORTHO05D008949 9.9e-15 84.0 82 51.2
CiPaw.10G036000 Carya illinoinensis HOM05D005503 ORTHO05D008949 1.3e-14 83.6 117 43.6
Actinidia39197 Actinidia chinensis HOM05D005503 ORTHO05D008949 2.2e-14 82.8 61 67.2
Duzib093G0766 Durio zibethinus HOM05D005503 ORTHO05D008949 2.2e-14 82.8 100 49.0
Migut.J01714 Erythranthe guttata HOM05D005503 ORTHO05D008949 2.2e-14 82.8 73 57.5
Thecc.05G146600 Theobroma cacao HOM05D005503 ORTHO05D008949 2.2e-14 82.8 69 56.5
Duzib128G0213 Durio zibethinus HOM05D005503 ORTHO05D008949 2.9e-14 82.4 69 53.6
EL10Ac3g07150 Beta vulgaris HOM05D005503 ORTHO05D008949 3.7e-14 82.0 135 40.7
ECA247G0412 Erigeron canadensis HOM05D005503 ORTHO05D008949 3.7e-14 82.0 118 43.2
FAN09G2222 Fragaria x ananassa HOM05D005503 ORTHO05D008949 3.7e-14 82.0 125 40.8
Gohir.A09G120500 Gossypium hirsutum HOM05D005503 ORTHO05D008949 3.7e-14 82.0 114 43.0
THA.LOC104816402 Tarenaya hassleriana HOM05D005503 ORTHO05D008949 3.7e-14 82.0 67 61.2
CAN.G1237.11 Capsicum annuum HOM05D005503 ORTHO05D008949 4.9e-14 81.6 120 44.2
SalBow6G3706 Salvia bowleyana HOM05D005503 ORTHO05D008949 4.9e-14 81.6 83 51.8
SalBow6G4155 Salvia bowleyana HOM05D005503 ORTHO05D008949 4.9e-14 81.6 83 51.8
Ciclev10006881m.g Citrus clementina HOM05D005503 ORTHO05D008949 6.4e-14 81.3 123 43.1
PSO063G5603 Papaver somniferum HOM05D005503 ORTHO05D008949 6.4e-14 81.3 77 55.8
Peaxi162Scf00130g00911 Petunia axillaris HOM05D005503 ORTHO05D008949 6.4e-14 81.3 126 42.9
QL07p004035 Quercus lobata HOM05D005503 ORTHO05D008949 6.4e-14 81.3 71 56.3
Nitab4.5_0001618g0220 Nicotiana tabacum HOM05D005503 ORTHO05D008949 8.4e-14 80.9 113 42.5
Sc13g0001540 Simmondsia chinensis HOM05D005503 ORTHO05D008949 1.4e-13 80.1 75 54.7
Oeu006918.1 Olea europaea HOM05D005503 ORTHO05D008949 1.9e-13 79.7 115 41.7
HanXRQChr10g0298211 Helianthus annuus HOM05D005503 ORTHO05D008949 2.4e-13 79.3 64 64.1
Nitab4.5_0000826g0100 Nicotiana tabacum HOM05D005503 ORTHO05D008949 2.4e-13 79.3 113 41.6
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 3.2e-13 79.0 88 51.1
DCAR_013615 Daucus carota HOM05D005503 ORTHO05D008949 3.2e-13 79.0 66 59.1
Ah.04g151390 Amaranthus hybridus HOM05D005503 ORTHO05D008949 4.1e-13 78.6 63 63.5
Eucgr.A02305 Eucalyptus grandis HOM05D005503 ORTHO05D008949 4.1e-13 78.6 64 60.9
CANSAT80G2315 Cannabis sativa HOM05D005503 ORTHO05D008949 5.4e-13 78.2 124 41.1
Cc06_g18190 Coffea canephora HOM05D005503 ORTHO05D008949 5.4e-13 78.2 116 44.8
Potri.016G044001 Populus trichocarpa HOM05D005503 ORTHO05D008949 9.2e-13 77.4 70 54.3
SGA_v2.0_scaffold69G23127 Striga asiatica HOM05D005503 ORTHO05D008949 2.7e-12 75.9 70 57.1
Dinv18679 Davidia involucrata HOM05D005503 ORTHO05D008949 5.1e-11 71.6 72 54.2
Mapoly0048s0063 Marchantia polymorpha HOM05D005503 ORTHO05D008949 6.6e-11 71.2 70 51.4
HPP92_018218 Vanilla planifolia HOM05D005503 ORTHO05D008949 8.6e-11 70.9 79 45.6
unitig_22.g6053 Utricularia gibba HOM05D005503 ORTHO05D008949 1.6e-09 66.6 93 44.1
vmacro21963 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 1.8e-08 63.2 72 48.6
Hma1.2p1_0005F.1_g004410 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 2.6e-07 59.3 70 50.0


User provided reference genes

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