Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 4.0e-69 264.6 131 100.0
Zm00001eb198830 Zea mays HOM05D000571 ORTHO05D000435 1.7e-11 73.2 48 72.9
Os08g0103400 Oryza sativa ssp. japonica HOM05D000571 ORTHO05D000435 2.5e-10 69.3 42 73.8
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.2e-09 67.0 63 55.6
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.0e-08 63.9 43 69.8
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.5e-07 60.1 57 52.6
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 3.3e-07 58.9 77 42.9
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 3.3e-07 58.9 62 45.2
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.3e-07 58.9 71 42.3
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 5.7e-07 58.2 95 37.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 5.7e-07 58.2 61 44.3
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.4e-07 57.8 60 46.7
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 7.4e-07 57.8 47 53.2
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 9.7e-07 57.4 64 46.9
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 9.7e-07 57.4 84 35.7
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 9.7e-07 57.4 80 37.5
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 9.7e-07 57.4 56 48.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.3e-06 57.0 47 51.1
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.3e-06 57.0 44 54.5
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.3e-06 57.0 81 42.0
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.3e-06 57.0 44 56.8
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.3e-06 57.0 90 34.4
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.6e-06 56.6 64 42.2
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.6e-06 56.6 83 39.8
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 2.2e-06 56.2 61 44.3
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.8e-06 55.8 58 50.0
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.8e-06 55.8 61 42.6
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.7e-06 55.5 60 40.0
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.7e-06 55.5 65 41.5
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 3.7e-06 55.5 64 43.8
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 3.7e-06 55.5 64 43.8
Lsat_1_v5_gn_9_42001 Lactuca sativa HOM05D000571 ORTHO05D000435 3.7e-06 55.5 50 56.0
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 3.7e-06 55.5 47 48.9
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 3.7e-06 55.5 47 51.1
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.8e-06 55.1 60 43.3
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 4.8e-06 55.1 46 54.3
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.8e-06 55.1 63 44.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 6.3e-06 54.7 78 34.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 6.3e-06 54.7 86 37.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.3e-06 54.7 64 42.2
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 6.3e-06 54.7 56 46.4
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 6.3e-06 54.7 47 48.9
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 6.3e-06 54.7 47 51.1
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 6.3e-06 54.7 44 54.5
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 8.2e-06 54.3 47 48.9
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 8.2e-06 54.3 44 52.3
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 8.2e-06 54.3 44 56.8


User provided reference genes

Program Settings