Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 4.6e-252 874.4 547 100.0
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 2.5e-173 612.8 550 75.1
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 2.6e-69 267.3 549 39.2
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.2e-61 241.9 529 44.2
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 3.4e-61 240.4 526 42.6
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.8e-60 237.3 512 48.4
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 1.4e-59 235.0 519 40.5
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 4.1e-59 233.4 521 45.9
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 4.1e-59 233.4 519 44.7
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 7.8e-58 229.2 531 42.6
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.0e-57 228.8 518 42.9
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 1.9e-56 224.6 516 44.4
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 1.2e-55 221.9 549 32.6
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 2.1e-55 221.1 537 44.5
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 3.6e-55 220.3 537 42.5
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 4.0e-54 216.9 537 43.4
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 4.0e-54 216.9 523 44.7
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 5.2e-54 216.5 551 31.9
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 1.2e-53 215.3 542 41.9
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 1.5e-53 214.9 542 44.3
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 3.4e-53 213.8 556 31.5
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 3.4e-53 213.8 550 40.5
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 5.7e-53 213.0 543 41.6
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 5.7e-53 213.0 544 43.8
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 7.5e-53 212.6 545 42.2
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 7.5e-53 212.6 525 44.6
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 1.3e-52 211.8 534 40.1
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 8.3e-52 209.1 543 40.3
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 1.4e-51 208.4 542 39.3
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 4.1e-51 206.8 530 40.0
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 5.4e-51 206.5 513 45.2
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 7.0e-51 206.1 530 40.0
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 7.0e-51 206.1 540 40.9
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.6e-50 204.9 516 42.8
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 2.0e-50 204.5 559 44.4
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 3.5e-50 203.8 534 39.1
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 4.6e-50 203.4 543 40.5
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 5.9e-50 203.0 281 39.1
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 7.8e-50 202.6 558 33.0
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 7.8e-50 202.6 535 41.3
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 1.0e-49 202.2 534 39.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 1.0e-49 202.2 534 39.5
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.3e-49 201.8 516 42.8
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 3.0e-49 200.7 516 42.1
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 3.9e-49 200.3 525 39.4
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 5.0e-49 199.9 546 42.7
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 6.6e-49 199.5 510 43.7
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 6.6e-49 199.5 552 38.9
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 2.5e-48 197.6 130 83.8
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 5.6e-48 196.4 516 38.8
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 9.5e-48 195.7 518 43.2
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 9.5e-48 195.7 539 39.3
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 9.5e-48 195.7 546 42.3
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 1.2e-47 195.3 516 39.3
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 1.6e-47 194.9 545 38.0
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 2.1e-47 194.5 545 39.1
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 2.1e-47 194.5 547 39.3
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 1.1e-46 192.2 545 37.8
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 1.8e-46 191.4 545 42.2
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 1.8e-46 191.4 520 43.1
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 1.8e-46 191.4 516 41.3
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 2.3e-46 191.0 536 39.7
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 2.3e-46 191.0 520 33.8
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 3.1e-46 190.7 545 40.2
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 3.1e-46 190.7 552 43.5
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 5.2e-46 189.9 539 37.7
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 5.2e-46 189.9 516 41.3
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 6.8e-46 189.5 538 39.4
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 6.8e-46 189.5 568 30.3
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 6.8e-46 189.5 513 41.9
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 8.9e-46 189.1 538 39.2
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 9.8e-45 185.7 554 40.1
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 1.3e-44 185.3 539 36.9
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 2.2e-44 184.5 468 43.2
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 1.9e-43 181.4 539 39.3
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 3.2e-43 180.6 534 39.0
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 1.2e-42 178.7 547 40.6
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 1.5e-40 171.8 513 43.9
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 9.5e-40 169.1 274 35.8
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.2e-39 168.7 283 34.3
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 8.9e-38 162.5 260 35.0
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 1.5e-37 161.8 255 35.3
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 2.6e-37 161.0 255 35.3
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 1.7e-36 158.3 280 35.4
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 2.2e-36 157.9 543 39.4
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 6.6e-33 146.4 251 33.1
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 8.1e-31 139.4 223 34.5
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 7.6e-29 132.9 168 39.9
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 8.4e-28 129.4 383 27.9
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 4.4e-21 107.1 222 29.7
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 3.8e-20 104.0 383 44.4
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 2.4e-19 101.3 250 29.2
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.6e-18 98.6 161 33.5
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 5.1e-17 93.6 132 43.2
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 4.3e-16 90.5 126 39.7
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 2.0e-13 81.6 95 45.3
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 5.8e-13 80.1 135 32.6
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 9.9e-13 79.3 88 44.3
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 3.5e-10 70.9 92 41.3
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 7.4e-08 63.2 98 40.8
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.1e-07 61.6 187 27.8
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 3.7e-07 60.8 101 34.7
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.4e-06 58.9 187 26.7
Ah.02g114350 Amaranthus hybridus HOM05D000001 ORTHO05D000003 2.4e-06 58.2 217 24.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 2.4e-06 58.2 199 25.6
CiPaw.04G016700 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.4e-06 58.2 115 34.8
CDE02G0122 Ceratophyllum demersum HOM05D000133 ORTHO05D005274 2.4e-06 58.2 109 31.2
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 5.3e-06 57.0 251 25.5
Ciclev10028146m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.9e-06 56.6 115 27.0
Glyma.13G062300 Glycine max HOM05D000001 ORTHO05D000003 6.9e-06 56.6 181 28.2
Thecc.04G084500 Theobroma cacao HOM05D000001 ORTHO05D000003 6.9e-06 56.6 127 29.9
EL10Ac6g14258 Beta vulgaris HOM05D000001 ORTHO05D000003 9.0e-06 56.2 117 30.8
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 9.0e-06 56.2 185 25.4


User provided reference genes

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