Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.1e-25 119.4 68 100.0
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.6e-16 89.0 59 88.1
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 5.5e-14 80.5 68 76.5
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 3.6e-13 77.8 68 72.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 6.1e-13 77.0 64 71.9
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 6.1e-13 77.0 68 70.6
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 6.1e-13 77.0 69 72.5
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.3e-12 75.1 69 69.6
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.3e-12 75.1 69 69.6
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 3.0e-12 74.7 68 70.6
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 3.0e-12 74.7 63 71.4
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 4.0e-12 74.3 63 76.2
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 4.0e-12 74.3 69 72.5
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 6.8e-12 73.6 69 68.1
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 8.8e-12 73.2 69 69.6
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.5e-11 72.4 59 74.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 3.4e-11 71.2 66 68.2
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.4e-11 71.2 58 70.7
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.7e-11 70.5 54 75.9
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 7.5e-11 70.1 63 69.8
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 9.8e-11 69.7 60 71.7
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 1.3e-10 69.3 65 69.2
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.3e-10 69.3 61 72.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.7e-10 68.9 68 67.6
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 2.2e-10 68.6 68 61.8
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.2e-10 68.6 65 69.2
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.8e-10 68.2 63 71.4
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 3.7e-10 67.8 50 78.0
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.7e-10 67.8 62 66.1
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 3.7e-10 67.8 65 69.2
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 4.8e-10 67.4 65 69.2
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 4.8e-10 67.4 58 72.4
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 4.8e-10 67.4 67 68.7
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 4.8e-10 67.4 70 68.6
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 4.8e-10 67.4 70 68.6
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 4.8e-10 67.4 69 66.7
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 6.3e-10 67.0 71 67.6
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 8.3e-10 66.6 59 69.5
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 8.3e-10 66.6 55 76.4
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 8.3e-10 66.6 54 72.2
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.1e-09 66.2 65 67.7
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.1e-09 66.2 54 77.8
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.8e-09 65.5 63 71.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.4e-09 65.1 67 65.7
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 3.1e-09 64.7 55 76.4
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 3.1e-09 64.7 59 71.2
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.1e-09 64.3 57 70.2
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 9.1e-09 63.2 55 72.7
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.1e-09 63.2 61 67.2
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 9.1e-09 63.2 54 72.2
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.6e-08 62.4 69 63.8
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 1.6e-08 62.4 70 64.3
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 2.0e-08 62.0 69 63.8
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 2.0e-08 62.0 70 60.0
Os01g0332700 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 2.0e-08 62.0 46 80.4
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 3.5e-08 61.2 42 78.6
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 3.5e-08 61.2 57 68.4
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 3.5e-08 61.2 53 73.6
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 3.5e-08 61.2 64 64.1
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 4.5e-08 60.8 55 70.9
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.9e-08 60.5 49 75.5
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 5.9e-08 60.5 57 73.7
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 5.9e-08 60.5 49 79.6
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 5.9e-08 60.5 69 60.9
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 5.9e-08 60.5 48 81.2
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 7.7e-08 60.1 47 76.6
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 7.7e-08 60.1 50 72.0
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 7.7e-08 60.1 48 75.0
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 7.7e-08 60.1 48 75.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 7.7e-08 60.1 52 67.3
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.0e-07 59.7 48 77.1
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.3e-07 59.3 48 75.0
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.3e-07 59.3 49 73.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-07 59.3 49 73.5
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.7e-07 58.9 47 78.7
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 1.7e-07 58.9 63 60.3
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.7e-07 58.9 47 78.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 1.7e-07 58.9 48 75.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.7e-07 58.9 48 79.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 3.8e-07 57.8 62 66.1
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.8e-07 57.8 48 75.0
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.0e-07 57.4 48 79.2
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 5.0e-07 57.4 59 66.1
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 6.6e-07 57.0 48 72.9
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 6.6e-07 57.0 67 61.2
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 6.6e-07 57.0 42 73.8
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.1e-06 56.2 44 79.5
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.5e-06 55.8 47 74.5
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.9e-06 55.5 45 75.6
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.9e-06 55.5 47 74.5
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.9e-06 55.5 47 74.5
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 1.9e-06 55.5 45 77.8
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 1.9e-06 55.5 48 70.8
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 2.5e-06 55.1 69 59.4
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 3.3e-06 54.7 47 72.3
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.3e-06 54.7 70 58.6
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.2e-06 54.3 71 60.6
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 7.2e-06 53.5 46 71.7
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 7.2e-06 53.5 62 61.3
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 7.2e-06 53.5 63 61.9
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.5e-06 53.1 67 59.7


User provided reference genes

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