Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.0e-222 776.5 420 100.0
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.1e-91 341.3 352 62.2
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 6.3e-84 315.5 203 85.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.8e-71 273.5 203 80.3
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.7e-68 264.2 428 46.3
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.1e-67 260.0 435 46.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.4e-67 259.2 411 47.0
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.2e-66 258.1 437 45.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.2e-66 258.1 420 47.6
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-66 257.3 439 46.9
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-65 254.2 435 46.4
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.7e-65 254.2 415 46.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-64 251.5 428 45.1
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.2e-63 248.1 423 47.5
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.1e-63 245.7 413 44.8
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-62 244.2 436 44.5
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.8e-62 244.2 436 44.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 3.0e-62 243.4 405 45.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 6.8e-62 242.3 421 45.4
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.9e-62 241.9 418 45.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.0e-61 240.7 422 46.2
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.4e-61 240.0 440 43.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 5.8e-61 239.2 425 46.1
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.8e-61 239.2 422 46.0
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.8e-61 239.2 436 43.8
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 5.8e-61 239.2 405 45.2
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.3e-60 235.3 435 43.9
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.1e-59 233.0 430 45.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.1e-59 233.0 413 43.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 9.2e-59 231.9 440 45.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 9.2e-59 231.9 432 45.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.6e-58 231.1 419 45.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.0e-58 230.7 427 43.8
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 6.0e-58 229.2 460 43.5
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 6.0e-58 229.2 445 44.7
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 7.8e-58 228.8 431 44.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.0e-57 228.4 429 42.4
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.3e-57 228.0 420 44.3
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.3e-57 228.0 420 44.3
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-57 228.0 345 47.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.3e-57 228.0 433 42.3
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.3e-57 227.3 410 42.7
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 3.0e-57 226.9 422 42.7
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 3.9e-57 226.5 456 42.1
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.9e-56 224.2 412 42.7
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.3e-56 223.0 401 45.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 5.6e-56 222.6 357 48.2
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.6e-56 222.6 457 41.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 9.5e-56 221.9 439 42.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 9.5e-56 221.9 352 47.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.2e-55 221.5 337 47.5
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 6.2e-55 219.2 424 44.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 8.0e-55 218.8 406 41.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 8.0e-55 218.8 452 41.2
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 8.0e-55 218.8 424 41.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 8.0e-55 218.8 417 42.7
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.1e-54 218.4 352 47.2
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.4e-54 218.0 421 43.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.8e-54 217.6 400 43.0
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 4.0e-54 216.5 358 47.2
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 5.2e-54 216.1 465 39.6
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 6.8e-54 215.7 459 40.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 8.9e-54 215.3 446 39.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.2e-53 214.9 422 41.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.5e-53 214.5 382 44.0
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.5e-53 214.5 422 41.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.0e-53 214.2 395 42.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.4e-53 213.0 412 43.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 7.5e-53 212.2 422 41.5
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 7.5e-53 212.2 425 43.3
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.5e-53 212.2 392 43.1
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.5e-53 212.2 473 40.2
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 9.8e-53 211.8 450 41.6
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 4.9e-52 209.5 442 39.8
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 6.4e-52 209.1 466 39.1
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.9e-51 207.6 384 45.3
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-51 207.2 507 36.9
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 4.1e-51 206.5 396 42.4
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.4e-51 206.1 424 40.1
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 7.0e-51 205.7 406 41.6
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-50 204.9 503 37.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.1e-50 204.1 416 40.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 4.6e-50 203.0 369 42.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 6.0e-50 202.6 508 37.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 6.0e-50 202.6 350 43.4
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 7.8e-50 202.2 507 35.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.7e-49 201.1 508 37.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.7e-49 201.1 508 37.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 8.6e-49 198.7 394 40.9
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 4.3e-48 196.4 474 37.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 5.6e-48 196.1 419 40.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 9.5e-48 195.3 372 42.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.5e-48 195.3 434 40.8
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 3.6e-47 193.4 361 42.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 4.7e-47 193.0 496 35.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 8.1e-47 192.2 422 38.4
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 8.1e-47 192.2 312 44.9
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.1e-46 191.8 515 35.3
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.4e-46 191.4 405 41.5
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 4.0e-46 189.9 376 42.6
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.7e-44 184.5 541 33.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.7e-44 184.5 435 38.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.2e-44 184.1 378 40.5
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 3.7e-44 183.3 433 40.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.1e-43 179.1 435 39.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.2e-42 178.3 527 35.3
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.6e-42 177.9 537 33.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.6e-42 177.9 354 40.7
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 7.8e-42 175.6 400 41.0
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 6.6e-41 172.6 449 37.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 6.6e-41 172.6 427 36.8
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.5e-40 170.6 513 35.9
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.6e-39 166.8 469 34.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 4.0e-38 163.3 396 37.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 8.9e-38 162.2 390 39.0
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.3e-36 158.3 313 41.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 6.4e-36 156.0 291 41.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.1e-35 155.2 434 35.5
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.9e-35 154.5 446 35.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.6e-34 151.4 370 36.8
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.3e-33 147.5 401 37.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 6.6e-33 146.0 332 37.3
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-32 144.4 318 40.9
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 9.6e-32 142.1 266 43.6
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.0e-29 134.4 457 32.2
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.7e-28 131.3 352 36.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.9e-27 127.9 173 50.3
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 8.1e-23 112.5 83 73.5
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.4e-22 110.9 372 34.1
Zm00001eb047480 Zea mays HOM05D004847 ORTHO05D005856 4.5e-21 106.7 72 81.9
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.6e-21 105.9 327 33.3
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.1e-19 102.1 96 62.5
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.4e-19 100.9 183 42.6
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 4.2e-19 100.1 162 38.9
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.1e-18 97.8 199 42.2
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.1e-15 85.9 59 66.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-14 85.1 51 76.5
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.5e-13 81.6 48 79.2
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 2.6e-13 80.9 48 79.2
Zm00001eb393340 Zea mays HOM05D004847 ORTHO05D005856 5.8e-13 79.7 69 66.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-11 75.5 44 81.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-11 73.6 44 77.3
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.1e-10 71.2 242 31.8
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.9e-08 64.7 167 35.3
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.3e-08 63.5 405 30.6


User provided reference genes

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