Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb286140 Zea mays HOM05D004241 ORTHO05D006031 1.5e-98 362.8 180 100.0
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 6.5e-46 188.0 148 73.6
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 7.2e-45 184.5 123 75.6
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 3.0e-43 179.1 133 69.2
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 6.7e-43 177.9 124 72.6
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 6.7e-43 177.9 123 72.4
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 1.2e-42 177.2 123 72.4
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 1.2e-42 177.2 141 68.8
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.5e-42 176.8 141 68.1
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 2.0e-42 176.4 142 64.8
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 2.0e-42 176.4 146 67.1
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 4.4e-42 175.3 126 72.2
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 4.4e-42 175.3 111 77.5
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 5.7e-42 174.9 126 72.2
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 5.7e-42 174.9 126 72.2
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 7.5e-42 174.5 126 73.0
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 7.5e-42 174.5 134 70.9
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 9.7e-42 174.1 106 81.1
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 9.7e-42 174.1 124 72.6
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 2.2e-41 172.9 134 67.9
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 2.8e-41 172.6 123 71.5
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 3.7e-41 172.2 115 72.2
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 3.7e-41 172.2 126 71.4
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 4.8e-41 171.8 128 69.5
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 4.8e-41 171.8 123 71.5
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 4.8e-41 171.8 110 78.2
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 4.8e-41 171.8 110 78.2
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 4.8e-41 171.8 128 68.8
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 6.3e-41 171.4 123 70.7
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 6.3e-41 171.4 134 67.2
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 6.3e-41 171.4 126 69.8
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 6.3e-41 171.4 138 64.5
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 8.2e-41 171.0 122 69.7
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 8.2e-41 171.0 133 66.2
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 1.1e-40 170.6 124 69.4
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 1.1e-40 170.6 118 73.7
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 1.4e-40 170.2 101 81.2
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 1.4e-40 170.2 101 81.2
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.4e-40 170.2 106 79.2
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 1.8e-40 169.9 121 72.7
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.8e-40 169.9 142 64.1
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 1.8e-40 169.9 133 67.7
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 2.4e-40 169.5 134 67.9
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 3.1e-40 169.1 100 81.0
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 4.1e-40 168.7 110 77.3
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 4.1e-40 168.7 103 79.6
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 4.1e-40 168.7 113 75.2
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 4.1e-40 168.7 120 70.8
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 7.0e-40 167.9 125 70.4
FAN09G0084 Fragaria x ananassa HOM05D004241 ORTHO05D006031 9.1e-40 167.5 143 66.4
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 9.1e-40 167.5 143 66.4
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 9.1e-40 167.5 101 79.2
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 9.1e-40 167.5 119 70.6
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 9.1e-40 167.5 120 70.0
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 1.2e-39 167.2 134 67.9
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 1.2e-39 167.2 134 67.9
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 1.2e-39 167.2 140 64.3
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 1.6e-39 166.8 111 74.8
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.6e-39 166.8 124 70.2
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 1.6e-39 166.8 142 62.7
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 1.6e-39 166.8 100 79.0
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 2.0e-39 166.4 111 76.6
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 2.0e-39 166.4 133 66.9
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 2.0e-39 166.4 141 64.5
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 3.5e-39 165.6 111 75.7
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 3.5e-39 165.6 113 73.5
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 3.5e-39 165.6 142 63.4
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 4.5e-39 165.2 112 75.0
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 4.5e-39 165.2 112 75.0
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 4.5e-39 165.2 142 62.0
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 4.5e-39 165.2 143 65.7
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 4.5e-39 165.2 123 69.9
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 5.9e-39 164.9 143 63.6
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 5.9e-39 164.9 123 69.9
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 5.9e-39 164.9 100 79.0
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 7.7e-39 164.5 111 74.8
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.0e-38 164.1 131 67.2
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 1.0e-38 164.1 131 67.2
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 1.0e-38 164.1 143 65.0
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 1.0e-38 164.1 136 65.4
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 1.3e-38 163.7 101 79.2
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 1.3e-38 163.7 134 64.2
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 1.3e-38 163.7 136 63.2
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 1.7e-38 163.3 112 74.1
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 1.7e-38 163.3 134 65.7
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 1.7e-38 163.3 100 80.0
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 2.2e-38 162.9 143 61.5
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 2.9e-38 162.5 102 78.4
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 2.9e-38 162.5 100 79.0
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 2.9e-38 162.5 140 62.1
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 6.5e-38 161.4 124 69.4
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 6.5e-38 161.4 101 76.2
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 6.5e-38 161.4 103 74.8
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 8.5e-38 161.0 107 74.8
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 8.5e-38 161.0 134 62.7
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 1.1e-37 160.6 145 60.7
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.5e-37 160.2 86 84.9
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 1.5e-37 160.2 100 76.0
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 1.5e-37 160.2 134 65.7
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 1.9e-37 159.8 101 74.3
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 2.5e-37 159.5 146 59.6
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 2.5e-37 159.5 100 77.0
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 3.2e-37 159.1 81 87.7
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 3.2e-37 159.1 102 76.5
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 4.2e-37 158.7 101 76.2
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 5.5e-37 158.3 100 75.0
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 5.5e-37 158.3 146 59.6
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 5.5e-37 158.3 102 76.5
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 9.4e-37 157.5 115 65.2
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 3.6e-36 155.6 101 72.3
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 1.8e-35 153.3 117 66.7
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 3.0e-35 152.5 101 71.3
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 8.8e-35 151.0 141 59.6
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 4.4e-34 148.7 143 60.1
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 1.7e-33 146.7 200 46.0
HPP92_013874 Vanilla planifolia HOM05D004241 ORTHO05D006031 4.8e-33 145.2 105 73.3
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 6.3e-33 144.8 129 59.7
arahy.Tifrunner.gnm1.ann1.DE57MX Arachis hypogaea HOM05D004241 ORTHO05D001299 8.3e-33 144.4 85 77.6
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 2.4e-32 142.9 100 69.0
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 3.1e-32 142.5 101 69.3
arahy.Tifrunner.gnm1.ann1.12W07B Arachis hypogaea HOM05D004241 ORTHO05D001299 5.4e-32 141.7 85 76.5
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 1.2e-31 140.6 80 82.5
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 1.6e-31 140.2 146 52.1
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 5.9e-31 138.3 106 66.0
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 2.3e-30 136.3 75 82.7
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.9e-30 136.0 108 63.0
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 3.8e-30 135.6 108 66.7
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 6.5e-30 134.8 138 54.3
arahy.Tifrunner.gnm1.ann1.ZW8CA6 Arachis hypogaea HOM05D004241 ORTHO05D006031 8.6e-30 134.4 90 71.1
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 1.5e-29 133.7 103 65.0
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 6.8e-27 124.8 185 41.6
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 1.3e-25 120.6 141 48.2
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.7e-25 120.2 60 85.0
Rhsim04G0126400 Rhododendron simsii HOM05D004241 ORTHO05D006031 2.4e-24 116.3 73 78.1
Prupe.4G268700 Prunus persica HOM05D004241 ORTHO05D006031 3.5e-23 112.5 56 89.3
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 2.5e-21 106.3 90 55.6
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 5.6e-21 105.1 100 53.0
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 1.5e-18 97.1 75 58.7
arahy.Tifrunner.gnm1.ann1.I63G1M Arachis hypogaea HOM05D004241 ORTHO05D006031 3.2e-16 89.4 58 75.9
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 5.0e-14 82.0 91 52.7
COL.COLO4_19973 Corchorus olitorius HOM05D004241 ORTHO05D006031 7.3e-13 78.2 34 91.2
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 1.6e-12 77.0 69 62.3
arahy.Tifrunner.gnm1.ann1.44A4XL Arachis hypogaea HOM05D004241 ORTHO05D026924 1.1e-11 74.3 54 70.4


User provided reference genes

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