Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 8.9e-122 440.3 220 100.0
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.6e-44 183.0 220 49.1
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.6e-22 110.5 135 41.5
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 1.4e-21 107.5 97 50.5
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.4e-20 102.4 117 43.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 7.5e-20 101.7 96 47.9
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.2e-19 100.1 97 45.4
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.9e-19 99.8 96 46.9
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 4.9e-19 99.0 96 46.9
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 8.3e-19 98.2 104 45.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.4e-18 97.4 97 47.4
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.4e-18 96.7 116 39.7
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 3.2e-18 96.3 102 42.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 4.1e-18 95.9 97 42.3
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 4.1e-18 95.9 86 47.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 4.1e-18 95.9 113 38.1
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 4.1e-18 95.9 96 43.8
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 4.1e-18 95.9 110 38.2
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 5.4e-18 95.5 97 42.3
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 9.2e-18 94.7 97 42.3
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 9.2e-18 94.7 104 41.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.2e-17 94.4 106 39.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.2e-17 94.4 96 44.8
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.2e-17 94.4 100 44.0
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 1.6e-17 94.0 142 36.6
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-17 93.6 104 40.4
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-17 93.6 104 40.4
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 2.7e-17 93.2 97 40.2
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.7e-17 93.2 103 41.7
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.7e-17 93.2 101 40.6
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.5e-17 92.8 97 40.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.5e-17 92.8 103 42.7
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.5e-17 92.8 97 41.2
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 4.6e-17 92.4 97 40.2
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 4.6e-17 92.4 97 40.2
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 4.6e-17 92.4 97 43.3
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 5.9e-17 92.0 102 40.2
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 5.9e-17 92.0 141 34.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 7.8e-17 91.7 97 42.3
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 7.8e-17 91.7 97 40.2
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 7.8e-17 91.7 97 40.2
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 7.8e-17 91.7 97 40.2
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-16 91.3 97 39.2
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 1.0e-16 91.3 97 40.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.3e-16 90.9 110 39.1
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.3e-16 90.9 102 37.3
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.3e-16 90.9 97 39.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-16 90.9 154 31.2
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.3e-16 90.9 97 42.3
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 1.7e-16 90.5 97 39.2
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.7e-16 90.5 94 43.6
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.3e-16 90.1 97 39.2
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 2.3e-16 90.1 98 41.8
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 3.0e-16 89.7 97 39.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.0e-16 89.7 97 40.2
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.0e-16 89.7 118 37.3
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 3.9e-16 89.4 97 41.2
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 5.0e-16 89.0 129 34.9
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 5.0e-16 89.0 96 43.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 5.0e-16 89.0 97 42.3
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 6.6e-16 88.6 96 43.8
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.6e-16 88.6 97 41.2
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 6.6e-16 88.6 97 40.2
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.6e-16 88.6 97 40.2
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 6.6e-16 88.6 97 40.2
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 6.6e-16 88.6 97 41.2
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 8.6e-16 88.2 129 34.9
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 8.6e-16 88.2 89 46.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-16 88.2 97 39.2
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-16 88.2 97 39.2
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 8.6e-16 88.2 125 35.2
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.1e-15 87.8 127 33.9
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.1e-15 87.8 138 37.0
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.1e-15 87.8 97 39.2
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.1e-15 87.8 142 34.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.5e-15 87.4 89 43.8
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.5e-15 86.7 113 40.7
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.5e-15 86.7 97 41.2
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 2.5e-15 86.7 97 40.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.5e-15 86.7 101 39.6
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 2.5e-15 86.7 91 44.0
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.5e-15 86.7 100 38.0
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.3e-15 86.3 97 40.2
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.3e-15 86.3 146 39.0
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 4.3e-15 85.9 92 39.1
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.3e-15 85.9 90 42.2
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 5.6e-15 85.5 132 35.6
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 5.6e-15 85.5 107 41.1
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 7.3e-15 85.1 93 44.1
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 9.5e-15 84.7 134 36.6
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 9.5e-15 84.7 128 35.9
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.2e-14 84.3 97 37.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.2e-14 84.3 96 36.5
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.2e-14 84.3 86 43.0
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.2e-14 84.3 97 44.3
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.2e-14 84.3 129 38.0
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.6e-14 84.0 95 38.9
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.6e-14 84.0 109 40.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.6e-14 84.0 96 42.7
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.6e-14 84.0 96 42.7
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.6e-14 84.0 100 41.0
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.1e-14 83.6 105 38.1
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 2.8e-14 83.2 94 43.6
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.8e-14 83.2 134 38.8
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 2.8e-14 83.2 136 36.0
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 2.8e-14 83.2 98 44.9
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.6e-14 82.8 113 39.8
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 4.7e-14 82.4 94 44.7
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 4.7e-14 82.4 101 34.7
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.7e-14 82.4 101 34.7
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 4.7e-14 82.4 111 40.5
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 6.2e-14 82.0 81 46.9
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 6.2e-14 82.0 111 40.5
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.2e-14 82.0 111 40.5
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 8.0e-14 81.6 94 43.6
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 8.0e-14 81.6 94 43.6
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 8.0e-14 81.6 94 43.6
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 8.0e-14 81.6 94 43.6
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 8.0e-14 81.6 94 43.6
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 8.0e-14 81.6 130 33.8
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 8.0e-14 81.6 119 34.5
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 8.0e-14 81.6 107 40.2
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.0e-13 81.3 102 37.3
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.0e-13 81.3 133 34.6
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.4e-13 80.9 94 42.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.4e-13 80.9 111 39.6
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.4e-13 80.9 115 37.4
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.4e-13 80.9 134 38.1
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.8e-13 80.5 94 43.6
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.8e-13 80.5 85 44.7
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.8e-13 80.5 94 42.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 2.3e-13 80.1 110 37.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.3e-13 80.1 115 36.5
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 3.1e-13 79.7 115 36.5
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.0e-13 79.3 135 34.1
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 4.0e-13 79.3 82 47.6
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 5.2e-13 79.0 97 37.1
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 5.2e-13 79.0 93 40.9
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 5.2e-13 79.0 104 36.5
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.2e-13 79.0 100 39.0
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 5.2e-13 79.0 89 41.6
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 5.2e-13 79.0 95 36.8
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.8e-13 78.6 115 36.5
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 6.8e-13 78.6 138 35.5
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 8.9e-13 78.2 115 39.1
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.9e-13 78.2 94 42.6
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 8.9e-13 78.2 93 37.6
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.2e-12 77.8 105 39.0
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.5e-12 77.4 90 44.4
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.5e-12 77.4 130 32.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.5e-12 77.4 111 38.7
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.0e-12 77.0 93 37.6
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.6e-12 76.6 112 37.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 3.4e-12 76.3 112 37.5
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.4e-12 76.3 95 35.8
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.4e-12 75.9 130 30.8
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 4.4e-12 75.9 113 33.6
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 9.8e-12 74.7 118 33.9
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.9e-11 72.4 110 37.3
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.4e-11 72.0 94 39.4
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.4e-10 70.9 119 36.1
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-10 70.5 86 33.7
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 3.2e-10 69.7 87 36.8
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 1.2e-09 67.8 87 41.4
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.6e-09 67.4 90 37.8
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 4.6e-09 65.9 84 34.5
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 3.0e-08 63.2 83 34.9
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.5e-07 60.8 67 44.8
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.3e-07 59.3 83 36.1
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 4.3e-07 59.3 66 39.4
arahy.Tifrunner.gnm1.ann1.KWYB1L Arachis hypogaea HOM05D008739 ORTHO05D010871 6.2e-06 55.5 95 31.6


User provided reference genes

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