Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 7.6e-203 710.3 361 100.0
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 2.1e-99 366.7 305 68.5
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.1e-87 327.8 182 94.5
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.4e-84 316.6 293 62.1
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 2.6e-62 243.4 287 48.4
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 6.5e-61 238.8 237 51.5
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.5e-60 236.9 260 49.2
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 5.5e-60 235.7 267 47.6
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.5e-59 233.0 261 50.2
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 4.6e-59 232.6 275 47.6
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 6.0e-59 232.3 284 46.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 3.0e-58 229.9 256 47.7
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 5.1e-58 229.2 259 48.6
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.1e-57 228.0 269 48.0
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.5e-57 227.6 269 48.0
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.9e-57 227.3 277 45.1
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 3.3e-57 226.5 289 47.8
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 4.3e-57 226.1 259 47.1
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 5.7e-57 225.7 261 48.3
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.4e-57 225.3 269 48.3
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 9.6e-57 224.9 267 47.2
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.6e-56 224.2 269 47.2
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.1e-56 223.8 319 44.2
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.8e-56 223.4 280 46.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 3.7e-56 223.0 265 47.5
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 4.8e-56 222.6 281 45.6
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 6.3e-56 222.2 296 43.9
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.4e-55 221.1 297 45.1
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.4e-55 221.1 245 46.9
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.4e-55 221.1 245 46.9
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 1.8e-55 220.7 263 46.8
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.8e-55 220.7 233 50.2
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.4e-55 220.3 255 46.7
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.4e-55 220.3 255 46.7
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.4e-55 220.3 266 47.0
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.4e-55 220.3 296 43.2
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.1e-55 219.5 288 43.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 9.0e-55 218.4 264 45.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.2e-54 218.0 261 46.4
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 1.2e-54 218.0 259 47.9
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.2e-54 218.0 270 45.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.5e-54 217.6 287 44.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 3.4e-54 216.5 250 48.0
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 4.5e-54 216.1 260 46.9
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.5e-54 216.1 253 47.8
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 5.9e-54 215.7 257 47.5
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 5.9e-54 215.7 295 44.1
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.0e-53 214.9 284 43.7
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.0e-53 214.9 255 47.1
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.0e-53 214.9 281 44.5
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.3e-53 214.5 281 45.2
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.3e-53 214.5 273 45.8
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.7e-53 214.2 261 47.1
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.2e-53 213.8 258 46.5
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.2e-53 213.8 294 44.9
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-53 213.8 291 44.0
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 2.9e-53 213.4 274 45.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.9e-53 213.4 272 44.9
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 6.5e-53 212.2 264 46.2
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 6.5e-53 212.2 281 44.8
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 8.5e-53 211.8 276 44.2
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 8.5e-53 211.8 275 45.1
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 8.5e-53 211.8 285 43.5
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.4e-52 211.1 253 46.2
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-52 210.7 274 42.7
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.2e-52 209.9 269 43.1
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.6e-51 207.6 264 43.6
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.6e-51 207.6 268 44.4
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 2.1e-51 207.2 266 44.0
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.7e-51 206.8 268 44.0
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 3.6e-51 206.5 252 45.6
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 6.1e-51 205.7 268 44.0
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 6.1e-51 205.7 266 44.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 1.8e-50 204.1 282 42.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 3.9e-50 203.0 321 40.8
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.5e-49 201.1 262 42.4
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.9e-49 200.7 266 42.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 2.5e-49 200.3 322 39.8
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 2.5e-49 200.3 268 44.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.1e-47 193.4 246 44.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.5e-46 191.0 254 44.5
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 2.6e-46 190.3 336 36.9
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.1e-44 184.9 259 44.0
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-44 184.9 317 40.4
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.7e-43 180.3 160 55.6
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 3.6e-43 179.9 269 39.8
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.3e-42 177.2 268 39.2
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.5e-41 174.5 145 60.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.8e-40 169.5 245 43.3
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.1e-39 166.8 233 42.9
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.1e-39 166.8 282 37.6
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 5.3e-39 166.0 216 45.8
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.0e-37 161.8 153 55.6
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.7e-37 161.0 285 36.1
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-35 154.1 301 33.2
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 5.2e-34 149.4 261 35.6
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-33 148.3 172 48.3
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.0e-33 147.5 258 38.4
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.3e-32 144.8 131 55.7
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-32 144.4 245 38.0
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 2.0e-30 137.5 224 37.9
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.0e-29 135.2 181 43.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.9e-29 133.7 183 43.7
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.1e-28 131.7 199 39.2
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.4e-23 114.8 104 53.8
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 4.1e-23 113.2 228 35.1
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.6e-22 111.3 280 30.0
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.7e-22 110.5 104 52.9
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 8.5e-21 105.5 151 43.0
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 9.4e-20 102.1 222 34.2
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 8.0e-19 99.0 112 49.1
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 3.4e-17 93.6 87 52.9
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.7e-16 91.3 91 52.7
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-15 87.4 87 50.6
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.6e-14 84.7 164 36.6
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.9e-13 80.5 158 34.2
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 3.6e-11 73.6 72 51.4
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.7e-08 64.7 117 33.3
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-08 63.9 84 46.4
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 8.3e-08 62.4 84 44.0


User provided reference genes

Program Settings