Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 4.0e-102 374.8 190 100.0
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.0e-81 307.0 194 80.4
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 3.5e-58 228.8 181 65.2
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 1.1e-56 223.8 180 63.9
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.8e-55 219.2 181 61.3
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 3.6e-55 218.8 179 63.7
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 6.2e-55 218.0 184 64.7
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 6.2e-55 218.0 190 63.2
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 6.2e-55 218.0 190 63.2
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 8.1e-55 217.6 183 63.4
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.1e-54 217.2 181 61.3
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.1e-54 217.2 183 63.4
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 1.4e-54 216.9 180 62.2
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.8e-54 216.5 188 60.1
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.4e-54 216.1 181 62.4
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 2.4e-54 216.1 180 62.8
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 4.0e-54 215.3 179 61.5
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 4.0e-54 215.3 181 61.3
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 5.3e-54 214.9 183 62.8
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 5.3e-54 214.9 183 62.8
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 6.9e-54 214.5 181 61.9
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 6.9e-54 214.5 185 60.5
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 9.0e-54 214.2 185 60.0
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 9.0e-54 214.2 183 61.7
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.2e-53 213.8 182 61.0
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.5e-53 213.4 187 62.0
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.5e-53 213.4 185 60.5
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 2.0e-53 213.0 183 61.7
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 2.6e-53 212.6 187 61.5
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 5.8e-53 211.5 182 61.5
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 5.8e-53 211.5 182 61.0
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 7.6e-53 211.1 187 57.2
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 2.2e-52 209.5 180 60.0
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 3.8e-52 208.8 181 59.1
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 3.8e-52 208.8 185 60.0
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 3.8e-52 208.8 180 60.6
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 6.4e-52 208.0 179 59.2
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 6.4e-52 208.0 187 59.9
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 6.4e-52 208.0 179 60.3
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 8.4e-52 207.6 189 58.2
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.1e-51 207.2 178 61.2
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 2.4e-51 206.1 187 58.8
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 4.2e-51 205.3 181 59.7
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 7.1e-51 204.5 185 61.1
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 9.3e-51 204.1 188 58.5
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 9.3e-51 204.1 194 56.7
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.2e-50 203.8 184 62.5
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.6e-50 203.4 185 57.8
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 2.1e-50 203.0 197 57.9
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.1e-50 203.0 184 58.2
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 4.6e-50 201.8 186 59.1
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 4.6e-50 201.8 186 59.1
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.6e-50 201.8 184 58.2
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 7.9e-50 201.1 185 60.0
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.0e-49 200.7 187 56.7
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.0e-49 200.7 181 59.1
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 1.3e-49 200.3 189 57.1
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 1.3e-49 200.3 188 58.0
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 3.0e-49 199.1 183 59.0
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 3.0e-49 199.1 183 59.6
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 3.9e-49 198.7 182 58.2
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 6.6e-49 198.0 183 58.5
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 6.6e-49 198.0 186 57.5
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.9e-48 196.4 218 51.4
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 1.9e-48 196.4 181 58.6
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.3e-48 195.7 184 58.7
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 4.3e-48 195.3 183 57.9
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 5.6e-48 194.9 182 57.7
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 9.6e-48 194.1 182 57.7
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.3e-47 193.7 184 57.6
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.6e-47 193.4 184 58.7
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 4.8e-47 191.8 184 56.5
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 4.8e-47 191.8 184 56.5
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 6.2e-47 191.4 183 56.8
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 8.1e-47 191.0 184 57.1
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 8.1e-47 191.0 180 57.2
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.1e-46 190.7 184 56.5
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 1.4e-46 190.3 184 56.0
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 2.4e-46 189.5 185 55.7
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 3.1e-46 189.1 184 54.9
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 4.0e-46 188.7 184 54.9
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 5.3e-46 188.3 184 55.4
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 5.3e-46 188.3 183 56.3
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 5.3e-46 188.3 180 56.7
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 6.9e-46 188.0 184 54.9
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 1.5e-45 186.8 185 57.3
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 2.6e-45 186.0 184 55.4
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.5e-45 185.3 185 56.2
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 5.8e-45 184.9 185 55.7
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.7e-44 183.3 180 55.0
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 3.8e-44 182.2 183 56.3
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 8.4e-44 181.0 220 48.2
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 1.1e-43 180.6 184 54.3
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 1.6e-42 176.8 180 52.8
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 1.8e-41 173.3 180 51.7
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 3.0e-41 172.6 180 50.0
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 8.7e-41 171.0 187 51.3
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.5e-40 170.2 184 53.8
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.5e-40 170.2 153 60.1
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 1.9e-40 169.9 180 50.6
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.5e-40 169.5 180 52.2
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 3.3e-40 169.1 181 54.1
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 6.2e-39 164.9 180 50.0
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 1.4e-38 163.7 180 50.6
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 9.0e-38 161.0 267 40.8
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 1.6e-31 140.2 137 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.1e-30 137.5 179 48.0
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.1e-30 137.5 189 47.6
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 6.7e-25 118.2 184 44.0
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 8.2e-23 111.3 114 54.4
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.6e-21 106.3 113 54.9
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 7.2e-19 98.2 112 52.7
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 5.7e-16 88.6 190 38.4
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 1.2e-13 80.9 118 43.2
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.1e-11 74.3 45 73.3
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 1.9e-11 73.6 67 53.7
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.5e-08 63.9 37 70.3
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.3e-07 60.8 194 27.8


User provided reference genes

Program Settings