Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 2.9e-42 174.9 92 100.0
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 3.6e-16 88.2 95 61.1
Os01g0178850 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 9.2e-12 73.6 90 54.4
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 6.6e-10 67.4 46 65.2
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 2.5e-09 65.5 39 74.4
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 1.6e-08 62.8 49 57.1
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 2.1e-08 62.4 58 48.3
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 2.8e-08 62.0 46 58.7
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 6.1e-08 60.8 34 76.5
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 6.1e-08 60.8 34 76.5
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 6.1e-08 60.8 34 76.5
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 6.1e-08 60.8 34 76.5
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 6.1e-08 60.8 57 54.4
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 1.4e-07 59.7 36 72.2
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.4e-07 59.7 53 54.7
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 2.3e-07 58.9 35 71.4
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 2.3e-07 58.9 35 71.4
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 2.3e-07 58.9 34 73.5
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 2.3e-07 58.9 37 64.9
AagrBONN_evm.TU.Sc2ySwM_368.1140 Anthoceros agrestis HOM05D008584 ORTHO05D010813 3.0e-07 58.5 31 71.0
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 3.0e-07 58.5 37 67.6
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 3.0e-07 58.5 52 51.9
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 5.2e-07 57.8 49 57.1
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 5.2e-07 57.8 38 63.2
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 5.2e-07 57.8 38 63.2
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 6.8e-07 57.4 43 67.4
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 8.9e-07 57.0 36 69.4
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.9e-07 57.0 37 67.6
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.9e-07 57.0 37 67.6
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 1.2e-06 56.6 36 63.9
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 1.5e-06 56.2 49 55.1
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.5e-06 56.2 48 54.2
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 2.6e-06 55.5 38 63.2
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 2.6e-06 55.5 38 60.5
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.6e-06 55.5 34 67.6
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.6e-06 55.5 34 67.6
vmacro22125 Vaccinium macrocarpon HOM05D008584 ORTHO05D010813 2.6e-06 55.5 34 70.6
Lj2g0015207 Lotus japonicus HOM05D008941 ORTHO05D010842 7.5e-06 53.9 44 50.0
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 9.8e-06 53.5 46 50.0
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 9.8e-06 53.5 35 60.0
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 9.8e-06 53.5 48 52.1


User provided reference genes

Program Settings