Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 5.9e-138 494.2 251 100.0
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.2e-109 400.2 251 82.9
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.5e-72 276.2 252 57.5
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.7e-68 263.5 250 57.2
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 2.5e-67 259.6 249 57.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 2.5e-67 259.6 256 55.9
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 3.2e-67 259.2 252 56.3
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 7.2e-67 258.1 249 57.0
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 7.2e-67 258.1 257 55.6
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.2e-66 257.3 249 54.2
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.1e-66 256.5 249 57.0
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.7e-66 256.1 256 53.5
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 4.6e-66 255.4 251 54.6
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 4.6e-66 255.4 256 54.7
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 7.9e-66 254.6 252 54.8
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.0e-65 254.2 254 53.9
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.0e-65 254.2 247 56.7
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.3e-65 253.8 255 56.5
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 1.8e-65 253.4 252 54.4
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 1.8e-65 253.4 252 55.2
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.3e-65 253.1 254 54.3
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 3.9e-65 252.3 251 53.8
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 6.7e-65 251.5 263 53.2
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 6.7e-65 251.5 253 55.7
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.1e-64 250.8 253 53.4
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 1.5e-64 250.4 254 53.9
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 3.3e-64 249.2 256 52.7
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 4.3e-64 248.8 251 53.0
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 5.7e-64 248.4 251 53.4
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 7.4e-64 248.1 253 53.8
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 9.7e-64 247.7 251 53.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 9.7e-64 247.7 252 53.6
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 1.3e-63 247.3 261 52.5
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 2.2e-63 246.5 255 53.7
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 2.2e-63 246.5 249 53.8
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 3.7e-63 245.7 254 54.7
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 3.7e-63 245.7 253 53.0
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 3.7e-63 245.7 250 54.4
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 8.2e-63 244.6 255 51.4
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 1.1e-62 244.2 254 54.7
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 1.8e-62 243.4 252 52.4
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 4.1e-62 242.3 255 52.2
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 6.9e-62 241.5 256 53.5
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 3.4e-61 239.2 256 50.8
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 4.5e-61 238.8 252 51.2
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.0e-60 237.7 249 50.6
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.0e-60 237.7 260 52.3
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.3e-60 237.3 256 50.0
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.7e-60 236.9 278 48.6
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.2e-60 236.5 257 51.0
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 2.9e-60 236.1 249 50.6
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.9e-60 236.1 249 50.6
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 3.8e-60 235.7 255 49.4
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 3.8e-60 235.7 256 53.5
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 3.8e-60 235.7 260 51.9
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 3.8e-60 235.7 252 51.2
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 5.0e-60 235.3 283 50.5
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 4.2e-59 232.3 276 47.5
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 5.5e-59 231.9 251 50.6
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 9.4e-59 231.1 252 51.6
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 3.6e-58 229.2 266 47.7
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 4.6e-58 228.8 256 50.8
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 6.1e-58 228.4 257 48.6
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 6.1e-58 228.4 256 51.2
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 6.1e-58 228.4 254 50.8
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 7.9e-58 228.0 256 50.4
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 1.0e-57 227.6 259 47.9
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.0e-57 227.6 256 48.4
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 3.9e-57 225.7 252 50.4
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 6.7e-57 224.9 253 51.0
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 8.8e-57 224.6 257 47.1
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 8.8e-57 224.6 247 51.0
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 8.8e-57 224.6 251 51.4
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.1e-56 224.2 259 51.0
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.5e-56 223.8 251 51.0
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.5e-56 223.0 250 51.2
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.3e-56 222.6 254 49.6
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.3e-56 222.6 200 55.0
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.2e-55 219.9 275 46.5
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 2.8e-55 219.5 259 48.3
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 3.7e-55 219.2 264 47.3
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 4.8e-55 218.8 250 49.2
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 8.2e-55 218.0 258 46.9
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 5.3e-54 215.3 249 48.2
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 3.4e-53 212.6 265 46.0
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 3.8e-52 209.1 259 45.6
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 8.5e-52 208.0 249 47.8
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.4e-51 207.2 264 47.0
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 3.2e-51 206.1 253 47.8
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 4.2e-51 205.7 256 46.9
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 5.1e-49 198.7 211 53.1
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 3.7e-47 192.6 262 41.6
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 8.2e-47 191.4 299 40.1
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.5e-45 186.0 194 53.6
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 8.0e-42 174.9 253 42.3
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 3.0e-41 172.9 253 42.3
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.0e-36 157.9 243 39.9
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 2.5e-35 153.3 159 48.4
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 2.1e-34 150.2 155 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 4.4e-32 142.5 227 39.6
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 9.8e-32 141.4 140 55.0
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 7.7e-29 131.7 177 42.4
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 5.0e-28 129.0 247 36.8
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.6e-16 90.1 91 49.5
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 6.4e-15 85.5 124 46.8
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 6.4e-15 85.5 219 30.6
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.4e-14 83.6 219 31.1
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.5e-11 73.6 110 47.3
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 1.4e-09 67.8 60 45.0


User provided reference genes

Program Settings