Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 5.7e-118 427.6 211 100.0
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 7.3e-89 330.9 217 77.4
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 3.6e-72 275.4 198 67.2
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 6.2e-72 274.6 182 68.1
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.8e-71 273.1 193 66.8
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 3.1e-71 272.3 198 65.2
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 5.3e-71 271.6 195 64.6
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 9.0e-71 270.8 167 70.7
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.2e-70 270.4 192 65.1
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 2.6e-70 269.2 193 64.8
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.4e-70 268.9 178 66.9
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 7.6e-70 267.7 165 72.1
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 9.9e-70 267.3 173 67.6
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.9e-69 265.8 199 62.8
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 2.9e-69 265.8 165 72.7
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.9e-69 265.8 177 67.2
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.8e-69 265.4 187 64.7
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 4.9e-69 265.0 165 70.3
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 6.4e-69 264.6 166 71.1
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 8.4e-69 264.2 165 70.3
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 1.9e-68 263.1 193 65.8
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.4e-68 262.7 167 69.5
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 3.2e-68 262.3 177 66.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.2e-68 262.3 165 69.7
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 3.2e-68 262.3 165 70.9
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 4.2e-68 261.9 190 63.2
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 4.2e-68 261.9 165 70.3
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.2e-68 261.9 187 61.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.4e-68 261.5 185 65.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.4e-68 261.5 185 65.4
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 7.1e-68 261.2 192 62.0
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 9.3e-68 260.8 185 64.9
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 9.3e-68 260.8 170 68.2
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 9.3e-68 260.8 165 69.1
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 9.3e-68 260.8 165 69.1
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 1.6e-67 260.0 166 68.1
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.1e-67 259.6 165 69.1
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.7e-67 259.2 195 62.1
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 6.0e-67 258.1 195 61.5
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 7.9e-67 257.7 165 69.7
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.0e-66 257.3 177 65.0
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.0e-66 257.3 165 67.9
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 3.0e-66 255.8 175 63.4
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 5.1e-66 255.0 166 67.5
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.1e-66 255.0 166 67.5
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.1e-66 255.0 166 67.5
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 6.6e-66 254.6 193 63.7
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 6.6e-66 254.6 175 65.1
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 8.7e-66 254.2 190 64.2
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.1e-65 253.8 170 65.3
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.5e-65 253.4 198 59.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.9e-65 253.1 171 63.2
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 2.5e-65 252.7 170 65.3
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.3e-65 252.3 187 62.6
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 5.6e-65 251.5 165 67.3
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.6e-65 251.5 199 58.3
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 7.3e-65 251.1 167 64.7
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 7.3e-65 251.1 173 63.0
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 9.6e-65 250.8 165 67.3
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.3e-64 250.4 165 67.3
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.6e-64 250.0 189 59.8
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.6e-64 248.8 199 55.3
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 6.2e-64 248.1 167 64.1
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 8.1e-64 247.7 195 56.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.1e-64 247.7 181 58.6
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.1e-64 247.7 181 58.6
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.1e-63 247.3 192 58.3
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 1.8e-63 246.5 165 67.9
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.8e-63 246.5 166 63.9
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 2.4e-63 246.1 183 60.1
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 2.4e-63 246.1 168 63.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.4e-63 246.1 169 63.9
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 2.4e-63 246.1 169 65.1
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.0e-63 245.4 205 56.1
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 5.3e-63 245.0 166 63.3
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 6.9e-63 244.6 174 63.8
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 6.9e-63 244.6 166 63.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 9.0e-63 244.2 174 62.1
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 9.0e-63 244.2 194 60.3
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 1.2e-62 243.8 195 57.9
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.2e-62 243.8 165 65.5
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.5e-62 243.4 194 59.3
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.0e-62 243.0 191 58.6
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 2.0e-62 243.0 194 59.3
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.6e-62 242.7 167 63.5
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.4e-62 242.3 181 61.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.4e-62 242.3 181 61.9
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 5.8e-62 241.5 166 63.9
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 9.9e-62 240.7 171 62.0
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 1.3e-61 240.4 222 52.7
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.7e-61 240.0 167 62.9
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.9e-61 239.2 167 62.9
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.9e-61 239.2 189 60.8
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 8.4e-61 237.7 198 56.6
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 1.1e-60 237.3 174 60.3
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 9.3e-60 234.2 182 61.5
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 2.7e-59 232.6 165 65.5
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.6e-59 231.9 174 58.6
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 7.9e-59 231.1 177 60.5
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 7.9e-59 231.1 177 60.5
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 8.7e-58 227.6 175 61.1
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 8.7e-58 227.6 175 56.6
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 8.7e-58 227.6 142 68.3
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.5e-57 226.9 175 60.0
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 3.3e-57 225.7 172 61.0
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 5.6e-57 224.9 195 54.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 9.6e-57 224.2 202 52.0
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 2.1e-56 223.0 177 58.8
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 2.8e-56 222.6 186 58.6
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 4.8e-56 221.9 150 66.0
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 8.1e-56 221.1 177 58.2
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 8.1e-56 221.1 177 58.2
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.4e-55 220.3 177 58.2
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.0e-55 218.8 177 58.2
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 3.2e-52 209.1 198 52.5
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 3.0e-50 202.6 304 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 2.5e-49 199.5 166 55.4
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 6.2e-48 194.9 128 69.5
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 3.1e-47 192.6 192 51.0
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 5.3e-47 191.8 125 65.6
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 8.4e-45 184.5 160 59.4
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 1.1e-44 184.1 138 65.2
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.1e-44 184.1 164 50.6
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 2.1e-43 179.9 208 46.6
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.3e-42 177.2 114 71.1
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 1.4e-34 150.6 166 45.2
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.7e-32 142.5 175 40.6
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.2e-30 137.5 195 42.1
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.0e-30 136.7 154 44.2
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 3.4e-30 136.0 151 49.0
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.8e-29 132.5 196 38.3
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.8e-26 123.6 74 67.6
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 3.9e-26 122.5 186 33.9
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.8e-24 116.3 170 36.5
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 7.2e-20 101.7 64 60.9
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 5.0e-13 79.0 69 56.5
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 6.5e-13 78.6 67 50.7
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 8.0e-11 71.6 144 36.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 7.5e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.3e-08 62.0 68 48.5


User provided reference genes

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