Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 5.0e-122 441.0 209 100.0
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 5.7e-102 374.4 189 89.4
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 1.4e-79 300.1 192 69.8
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 1.4e-79 300.1 192 69.8
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 4.0e-79 298.5 192 69.3
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 5.2e-79 298.1 192 69.3
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 6.8e-79 297.7 192 69.3
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 1.5e-78 296.6 192 69.3
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.5e-78 296.6 192 68.8
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 2.0e-78 296.2 192 69.8
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 2.0e-78 296.2 192 69.3
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 2.6e-78 295.8 192 69.8
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.6e-78 295.8 192 69.8
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.6e-78 295.8 192 69.3
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 2.6e-78 295.8 192 69.3
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 4.4e-78 295.0 192 69.3
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 9.8e-78 293.9 188 70.2
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 1.7e-77 293.1 192 68.2
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.8e-77 292.4 192 68.8
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 2.8e-77 292.4 189 69.8
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.7e-77 292.0 192 69.3
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 3.7e-77 292.0 192 67.2
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 6.3e-77 291.2 188 69.7
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 6.3e-77 291.2 222 61.7
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 1.1e-76 290.4 192 68.2
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 1.4e-76 290.0 188 70.2
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 4.1e-76 288.5 195 66.7
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 7.0e-76 287.7 193 67.9
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 9.2e-76 287.3 188 68.1
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.6e-75 286.6 191 68.1
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 1.6e-75 286.6 188 68.6
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 2.0e-75 286.2 191 67.0
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 2.7e-75 285.8 188 67.6
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 3.5e-75 285.4 188 68.1
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 4.5e-75 285.0 194 65.5
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 4.5e-75 285.0 188 67.0
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 5.9e-75 284.6 192 68.2
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 5.9e-75 284.6 188 68.1
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 5.9e-75 284.6 188 67.6
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 1.0e-74 283.9 191 67.5
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.7e-74 283.1 188 67.0
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 1.7e-74 283.1 188 68.1
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 2.3e-74 282.7 194 66.0
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 2.3e-74 282.7 188 68.6
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 2.9e-74 282.3 188 68.1
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 2.9e-74 282.3 188 68.1
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 3.9e-74 282.0 199 65.3
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 3.9e-74 282.0 191 67.0
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 5.0e-74 281.6 199 65.3
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 5.0e-74 281.6 199 65.3
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 6.6e-74 281.2 188 66.0
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 6.6e-74 281.2 199 65.3
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 6.6e-74 281.2 188 68.1
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 8.6e-74 280.8 199 65.3
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 2.5e-73 279.3 199 65.3
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 2.5e-73 279.3 188 67.6
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 3.3e-73 278.9 199 65.3
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 3.3e-73 278.9 199 65.3
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 4.3e-73 278.5 199 65.3
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 4.3e-73 278.5 199 65.3
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 4.3e-73 278.5 199 65.3
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 9.5e-73 277.3 199 64.8
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 1.6e-72 276.6 198 64.1
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 8.0e-72 274.2 191 63.9
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 1.8e-71 273.1 191 65.4
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 1.8e-71 273.1 191 65.4
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 4.0e-71 271.9 191 63.4
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 4.0e-71 271.9 192 64.1
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 4.0e-71 271.9 191 64.9
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 6.8e-71 271.2 194 62.9
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 6.8e-71 271.2 193 64.8
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 8.9e-71 270.8 205 62.4
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 1.2e-70 270.4 191 64.4
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 1.2e-70 270.4 182 69.2
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 2.6e-70 269.2 201 61.2
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 1.1e-68 263.8 188 64.4
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 1.1e-68 263.8 169 70.4
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 1.1e-68 263.8 170 69.4
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 1.9e-68 263.1 196 63.3
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 3.2e-68 262.3 188 64.4
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 7.0e-68 261.2 185 65.4
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 7.8e-67 257.7 170 67.1
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 3.3e-65 252.3 171 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 2.8e-64 249.2 189 59.3
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 3.1e-63 245.7 193 59.1
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 2.0e-62 243.0 193 58.5
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 1.7e-61 240.0 184 60.9
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 8.3e-61 237.7 189 57.1
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 4.1e-60 235.3 171 64.9
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 1.2e-59 233.8 208 57.7
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 7.8e-59 231.1 294 43.5
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.3e-58 230.3 200 57.5
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 2.5e-57 226.1 188 59.0
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 3.6e-56 222.2 199 56.3
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 3.4e-54 215.7 183 55.7
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 4.4e-54 215.3 141 68.8
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 7.8e-51 204.5 189 52.9
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 2.0e-46 189.9 155 58.7
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 3.4e-46 189.1 189 51.3
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 4.4e-46 188.7 189 49.7
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 9.9e-46 187.6 170 55.9
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 1.0e-42 177.6 188 48.9
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 1.6e-40 170.2 145 56.6
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 2.1e-40 169.9 173 48.6
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 3.4e-38 162.5 118 61.9
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 1.3e-37 160.6 102 69.6
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 1.3e-37 160.6 102 69.6
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 7.1e-36 154.8 105 66.7
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 1.6e-35 153.7 156 49.4
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 1.3e-34 150.6 162 48.1
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 2.8e-32 142.9 102 63.7
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 4.0e-31 139.0 118 57.6
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 6.4e-29 131.7 106 60.4
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 7.9e-27 124.8 90 61.1
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 2.3e-26 123.2 89 64.0
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 1.1e-25 120.9 83 65.1
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 4.5e-22 109.0 74 66.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 3.8e-21 105.9 67 70.1
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.4e-20 104.0 208 33.7
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 2.5e-09 66.6 53 62.3
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 2.5e-09 66.6 241 24.1


User provided reference genes

Program Settings