Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb277740 Zea mays HOM05D003600 ORTHO05D004129 1.0e-61 240.4 169 100.0
Zm00001eb242280 Zea mays HOM05D003600 ORTHO05D004129 3.5e-25 119.0 73 83.6
Os02g0523800 Oryza sativa ssp. japonica HOM05D003600 ORTHO05D004129 2.9e-19 99.4 76 76.3
Zm00001eb049690 Zea mays HOM05D003600 ORTHO05D004129 4.1e-18 95.5 48 95.8
HPP92_023047 Vanilla planifolia HOM05D003600 ORTHO05D004129 9.5e-15 84.3 73 54.8
HPP92_023098 Vanilla planifolia HOM05D003600 ORTHO05D004129 9.5e-15 84.3 73 54.8
CiPaw.11G031800 Carya illinoinensis HOM05D003600 ORTHO05D004129 2.8e-14 82.8 72 54.2
Actinidia25502 Actinidia chinensis HOM05D003600 ORTHO05D004129 6.2e-14 81.6 72 55.6
arahy.Tifrunner.gnm1.ann1.3H24VY Arachis hypogaea HOM05D003600 ORTHO05D004129 6.2e-14 81.6 73 52.1
arahy.Tifrunner.gnm1.ann1.LCBQ0N Arachis hypogaea HOM05D003600 ORTHO05D004129 6.2e-14 81.6 73 52.1
CANSAT21G0784 Cannabis sativa HOM05D003600 ORTHO05D004129 1.1e-13 80.9 72 55.6
MBI07_g42018_MAGBIO Magnolia biondii HOM05D003600 ORTHO05D004129 1.1e-13 80.9 72 54.2
Nitab4.5_0011883g0010 Nicotiana tabacum HOM05D003600 ORTHO05D004129 1.1e-13 80.9 72 55.6
Lj5C86T10 Lonicera japonica HOM05D003600 ORTHO05D004129 1.4e-13 80.5 72 55.6
SGA_v2.0_scaffold135G34970 Striga asiatica HOM05D003600 ORTHO05D004129 1.4e-13 80.5 72 54.2
SGA_v2.0_scaffold2947G54248 Striga asiatica HOM05D003600 ORTHO05D004129 1.4e-13 80.5 72 54.2
DCAR_016326 Daucus carota HOM05D003600 ORTHO05D004129 1.8e-13 80.1 72 54.2
Nitab4.5_0000976g0240 Nicotiana tabacum HOM05D003600 ORTHO05D004129 1.8e-13 80.1 72 54.2
Rhsim12G0182400 Rhododendron simsii HOM05D003600 ORTHO05D004129 1.8e-13 80.1 72 55.6
CAN.G1008.39 Capsicum annuum HOM05D003600 ORTHO05D004129 2.3e-13 79.7 72 54.2
EL10Ac2g02484 Beta vulgaris HOM05D003600 ORTHO05D004129 3.1e-13 79.3 72 51.4
PGR102G1650 Punica granatum HOM05D003600 ORTHO05D004129 3.1e-13 79.3 72 54.2
Hma1.2p1_0338F.1_g129510 Hydrangea macrophylla HOM05D003600 ORTHO05D004129 4.0e-13 79.0 72 54.2
Peaxi162Scf00314g00710 Petunia axillaris HOM05D003600 ORTHO05D004129 4.0e-13 79.0 72 52.8
CSS0048148 Camellia sinensis var. sinensis HOM05D003600 ORTHO05D004129 5.2e-13 78.6 72 52.8
Gohir.D03G111300 Gossypium hirsutum HOM05D003600 ORTHO05D004129 5.2e-13 78.6 72 51.4
Gorai.003G117800 Gossypium raimondii HOM05D003600 ORTHO05D004129 5.2e-13 78.6 72 51.4
Nn3g21004 Nelumbo nucifera HOM05D003600 ORTHO05D004129 5.2e-13 78.6 72 52.8
Nn6g34426 Nelumbo nucifera HOM05D003600 ORTHO05D004129 5.2e-13 78.6 72 54.2
FvH4_5g09980 Fragaria vesca HOM05D003600 ORTHO05D004129 6.8e-13 78.2 72 52.8
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.8e-13 78.2 72 52.8
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.8e-13 78.2 72 52.8
Oeu012859.1 Olea europaea HOM05D003600 ORTHO05D004129 6.8e-13 78.2 72 51.4
Solyc03g118000.1 Solanum lycopersicum HOM05D003600 ORTHO05D004129 6.8e-13 78.2 72 52.8
Sopen03g036900 Solanum pennellii HOM05D003600 ORTHO05D004129 6.8e-13 78.2 72 52.8
MSTRG.22821 Avicennia marina HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 54.2
CiPaw.11G031900 Carya illinoinensis HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 52.8
Haze_07074 Corylus avellana HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 54.2
Nitab4.5_0004781g0070 Nicotiana tabacum HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 52.8
PSO339G5399 Papaver somniferum HOM05D003600 ORTHO05D004129 8.9e-13 77.8 74 52.7
Prupe.5G138600 Prunus persica HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 51.4
Rhsim08G0200000 Rhododendron simsii HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 52.8
TWI23G0234 Tripterygium wilfordii HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 51.4
vmacro19099 Vaccinium macrocarpon HOM05D003600 ORTHO05D004129 8.9e-13 77.8 72 52.8
EL10Ac7g17784 Beta vulgaris HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 55.6
ECA232G3549 Erigeron canadensis HOM05D003600 ORTHO05D004129 1.2e-12 77.4 74 50.0
Lsat_1_v5_gn_4_85361 Lactuca sativa HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 52.8
Nn3g20929 Nelumbo nucifera HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 54.2
Nitab4.5_0002540g0080 Nicotiana tabacum HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 54.2
Oeu051175.1 Olea europaea HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 51.4
PSO384G4838 Papaver somniferum HOM05D003600 ORTHO05D004129 1.2e-12 77.4 74 51.4
PSO801G0512 Papaver somniferum HOM05D003600 ORTHO05D004129 1.2e-12 77.4 74 52.7
Hund02975 Selenicereus undatus HOM05D003600 ORTHO05D004129 1.2e-12 77.4 72 52.8
CSS0043550 Camellia sinensis var. sinensis HOM05D003600 ORTHO05D004129 1.5e-12 77.0 72 51.4
DCAR_021389 Daucus carota HOM05D003600 ORTHO05D004129 1.5e-12 77.0 72 51.4
Dinv13696 Davidia involucrata HOM05D003600 ORTHO05D004129 1.5e-12 77.0 72 54.2
Sed0002003 Sechium edule HOM05D003600 ORTHO05D004129 1.5e-12 77.0 73 49.3
EL10Ac2g02483 Beta vulgaris HOM05D003600 ORTHO05D004129 2.0e-12 76.6 73 50.7
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.0e-12 76.6 72 51.4
PSO339G3286 Papaver somniferum HOM05D003600 ORTHO05D004129 2.0e-12 76.6 74 51.4
THA.LOC104818295 Tarenaya hassleriana HOM05D003600 ORTHO05D004129 2.0e-12 76.6 72 56.9
TWI14G0645 Tripterygium wilfordii HOM05D003600 ORTHO05D004129 2.0e-12 76.6 72 51.4
TAR633G0744 Trochodendron aralioides HOM05D003600 ORTHO05D004129 2.0e-12 76.6 72 52.8
Atru.chr6.1951 Acer truncatum HOM05D003600 ORTHO05D004129 2.6e-12 76.3 73 50.7
QL10p065288 Quercus lobata HOM05D003600 ORTHO05D004129 2.6e-12 76.3 72 51.4
Sed0023857 Sechium edule HOM05D003600 ORTHO05D004129 2.6e-12 76.3 74 48.6
Thecc.03G143200 Theobroma cacao HOM05D003600 ORTHO05D004129 2.6e-12 76.3 69 52.2
CANSAT21G1258 Cannabis sativa HOM05D003600 ORTHO05D004129 3.4e-12 75.9 72 52.8
AUR62032430 Chenopodium quinoa HOM05D003600 ORTHO05D004129 3.4e-12 75.9 72 50.0
CsaV3_4G002480 Cucumis sativus L. HOM05D003600 ORTHO05D004129 3.4e-12 75.9 73 47.9
RcHm_v2.0_Chr7g0188281 Rosa chinensis HOM05D003600 ORTHO05D004129 3.4e-12 75.9 72 50.0
SalBow7G4712 Salvia bowleyana HOM05D003600 ORTHO05D004129 3.4e-12 75.9 72 52.8
PGSC0003DMG400014228 Solanum tuberosum HOM05D003600 ORTHO05D004129 3.4e-12 75.9 72 51.4
Zm00001eb221960 Zea mays HOM05D003600 ORTHO05D004129 3.4e-12 75.9 36 97.2
CSS0004922 Camellia sinensis var. sinensis HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 50.0
CSS0012447 Camellia sinensis var. sinensis HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 50.0
CAN.G47.2 Capsicum annuum HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 52.8
Gohir.A12G194900 Gossypium hirsutum HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 48.6
QL10p000163 Quercus lobata HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 50.0
Solyc12g042430.2 Solanum lycopersicum HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 52.8
Sopen12g021420 Solanum pennellii HOM05D003600 ORTHO05D004129 4.4e-12 75.5 72 52.8
PGSC0003DMG400014467 Solanum tuberosum HOM05D003600 ORTHO05D004129 5.8e-12 75.1 72 52.8
Gorai.008G211900 Gossypium raimondii HOM05D003600 ORTHO05D004129 7.5e-12 74.7 72 47.2
Lalb_Chr19g0131951 Lupinus albus HOM05D003600 ORTHO05D004129 7.5e-12 74.7 73 50.7
Zm00001eb396850 Zea mays HOM05D003600 ORTHO05D004129 7.5e-12 74.7 36 94.4
Ah.08g213960 Amaranthus hybridus HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 54.2
Ah.10g025710 Amaranthus hybridus HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 50.0
BcaB01g02173 Brassica carinata HOM05D003600 ORTHO05D004129 9.9e-12 74.3 73 47.9
CSS0034139 Camellia sinensis var. sinensis HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 51.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 51.4
Gohir.D12G197300 Gossypium hirsutum HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 47.2
PGR142G4275 Punica granatum HOM05D003600 ORTHO05D004129 9.9e-12 74.3 72 52.8
Zm00001eb076370 Zea mays HOM05D003600 ORTHO05D004129 9.9e-12 74.3 36 94.4
CANSAT35G0374 Cannabis sativa HOM05D003600 ORTHO05D004129 1.3e-11 73.9 72 51.4
Cc04_g05610 Coffea canephora HOM05D003600 ORTHO05D004129 1.3e-11 73.9 72 50.0
Gohir.A03G055300 Gossypium hirsutum HOM05D003600 ORTHO05D004129 1.3e-11 73.9 72 50.0
Hma1.2p1_0577F.1_g182100 Hydrangea macrophylla HOM05D003600 ORTHO05D004129 1.3e-11 73.9 72 52.8
BcaC04g23437 Brassica carinata HOM05D003600 ORTHO05D004129 1.7e-11 73.6 72 52.8
A09p07430 Brassica napus HOM05D003600 ORTHO05D004129 1.7e-11 73.6 72 52.8
BolC9t53744H Brassica oleracea HOM05D003600 ORTHO05D004129 1.7e-11 73.6 72 52.8
Cpa.g.sc13.199 Carica papaya HOM05D003600 ORTHO05D004129 1.7e-11 73.6 72 50.0
Thhalv10013933m.g Eutrema salsugineum HOM05D003600 ORTHO05D004129 1.7e-11 73.6 72 50.0
C09p08340 Brassica napus HOM05D003600 ORTHO05D004129 2.2e-11 73.2 72 52.8
CDE12G0602 Ceratophyllum demersum HOM05D003600 ORTHO05D004129 2.2e-11 73.2 72 51.4
MELO3C017795.2 Cucumis melo HOM05D003600 ORTHO05D004129 2.2e-11 73.2 73 46.6
Duzib205G1190 Durio zibethinus HOM05D003600 ORTHO05D004129 2.2e-11 73.2 72 48.6
MD00G1076800 Malus domestica HOM05D003600 ORTHO05D004129 2.2e-11 73.2 72 47.2
Sabra12G0081100 Salix brachista HOM05D003600 ORTHO05D004129 2.2e-11 73.2 72 48.6
Aa31LG3G19000 Aethionema arabicum HOM05D003600 ORTHO05D004129 2.9e-11 72.8 72 51.4
BcaNung01421 Brassica carinata HOM05D003600 ORTHO05D004129 2.9e-11 72.8 72 52.8
Eucgr.K03510 Eucalyptus grandis HOM05D003600 ORTHO05D004129 2.9e-11 72.8 72 50.0
Potri.012G111400 Populus trichocarpa HOM05D003600 ORTHO05D004129 2.9e-11 72.8 72 48.6
Potri.015G109500 Populus trichocarpa HOM05D003600 ORTHO05D004129 2.9e-11 72.8 69 52.2
Atru.chr4.1248 Acer truncatum HOM05D003600 ORTHO05D004129 3.7e-11 72.4 72 47.2
ATR0582G054 Amborella trichopoda HOM05D003600 ORTHO05D004129 3.7e-11 72.4 72 48.6
BraA09t36397Z Brassica rapa HOM05D003600 ORTHO05D004129 3.7e-11 72.4 72 51.4
PSO017G1632 Papaver somniferum HOM05D003600 ORTHO05D004129 3.7e-11 72.4 72 51.4
COL.COLO4_37284 Corchorus olitorius HOM05D003600 ORTHO05D004129 4.9e-11 72.0 72 47.2
HanXRQChr09g0274361 Helianthus annuus HOM05D003600 ORTHO05D004129 4.9e-11 72.0 72 48.6
unitig_22.g6272 Utricularia gibba HOM05D003600 ORTHO05D004129 4.9e-11 72.0 72 50.0
BcaC06g30949 Brassica carinata HOM05D003600 ORTHO05D004129 6.4e-11 71.6 73 49.3
BraA06t26996Z Brassica rapa HOM05D003600 ORTHO05D004129 6.4e-11 71.6 73 49.3
Sabra15G0131700 Salix brachista HOM05D003600 ORTHO05D004129 6.4e-11 71.6 72 48.6
Sc17g0004250 Simmondsia chinensis HOM05D003600 ORTHO05D004129 6.4e-11 71.6 72 51.4
HanXRQChr16g0499331 Helianthus annuus HOM05D003600 ORTHO05D004129 8.3e-11 71.2 72 47.2
Peaxi162Scf00674g00037 Petunia axillaris HOM05D003600 ORTHO05D004129 8.3e-11 71.2 72 48.6
Zm00001eb287040 Zea mays HOM05D003600 ORTHO05D004129 8.3e-11 71.2 36 88.9
Ah.10g025740 Amaranthus hybridus HOM05D003600 ORTHO05D004129 1.4e-10 70.5 72 47.2
Aqoxy5G03196 Aquilegia oxysepala HOM05D003600 ORTHO05D004129 1.4e-10 70.5 72 48.6
Aqoxy7G01841 Aquilegia oxysepala HOM05D003600 ORTHO05D004129 1.4e-10 70.5 72 48.6
A06p40750 Brassica napus HOM05D003600 ORTHO05D004129 1.4e-10 70.5 73 49.3
Thhalv10004707m.g Eutrema salsugineum HOM05D003600 ORTHO05D004129 1.4e-10 70.5 76 48.7
AT5G07370 Arabidopsis thaliana HOM05D003600 ORTHO05D004129 1.9e-10 70.1 73 50.7
Manes.06G128400 Manihot esculenta HOM05D003600 ORTHO05D004129 1.9e-10 70.1 72 47.2
BcaC06g32444 Brassica carinata HOM05D003600 ORTHO05D004129 2.4e-10 69.7 72 51.4
C09p69510 Brassica napus HOM05D003600 ORTHO05D004129 2.4e-10 69.7 72 51.4
BolC9t59695H Brassica oleracea HOM05D003600 ORTHO05D004129 2.4e-10 69.7 72 51.4
Manes.14G042900 Manihot esculenta HOM05D003600 ORTHO05D004129 2.4e-10 69.7 72 47.2
Aqoxy3G03509 Aquilegia oxysepala HOM05D003600 ORTHO05D004129 3.2e-10 69.3 72 47.2
BcaC06g33768 Brassica carinata HOM05D003600 ORTHO05D004129 3.2e-10 69.3 73 47.9
C07p37150 Brassica napus HOM05D003600 ORTHO05D004129 3.2e-10 69.3 73 47.9
BolC7t44226H Brassica oleracea HOM05D003600 ORTHO05D004129 3.2e-10 69.3 73 47.9
Gohir.D11G006400 Gossypium hirsutum HOM05D003600 ORTHO05D004129 3.2e-10 69.3 72 47.2
Gorai.007G007700 Gossypium raimondii HOM05D003600 ORTHO05D004129 3.2e-10 69.3 72 47.2
A10p29120 Brassica napus HOM05D003600 ORTHO05D004129 4.1e-10 68.9 72 51.4
BraA10t44961Z Brassica rapa HOM05D003600 ORTHO05D004129 4.1e-10 68.9 72 51.4
Dinv01389 Davidia involucrata HOM05D003600 ORTHO05D004129 4.1e-10 68.9 45 62.2
Aa31LG11G1730 Aethionema arabicum HOM05D003600 ORTHO05D004129 5.4e-10 68.6 73 49.3
AL8G38520 Arabidopsis lyrata HOM05D003600 ORTHO05D004129 5.4e-10 68.6 76 48.7
Sp2g24960 Schrenkiella parvula HOM05D003600 ORTHO05D004129 5.4e-10 68.6 77 46.8
AT5G61760 Arabidopsis thaliana HOM05D003600 ORTHO05D004129 7.1e-10 68.2 76 48.7
Carub.0006s0634 Capsella rubella HOM05D003600 ORTHO05D004129 7.1e-10 68.2 73 50.7
CARHR205780 Cardamine hirsuta HOM05D003600 ORTHO05D004129 7.1e-10 68.2 74 47.3
Ciclev10032104m.g Citrus clementina HOM05D003600 ORTHO05D004129 7.1e-10 68.2 72 45.8
Lj9P489T20 Lonicera japonica HOM05D003600 ORTHO05D004129 7.1e-10 68.2 72 51.4
Mapoly0118s0021 Marchantia polymorpha HOM05D003600 ORTHO05D004129 7.1e-10 68.2 74 47.3
Sp6g35500 Schrenkiella parvula HOM05D003600 ORTHO05D004129 7.1e-10 68.2 72 50.0
MD06G1128700 Malus domestica HOM05D003600 ORTHO05D004129 1.2e-09 67.4 68 47.1
AL6G17670 Arabidopsis lyrata HOM05D003600 ORTHO05D004129 1.6e-09 67.0 74 48.6
Carub.0008s2245 Capsella rubella HOM05D003600 ORTHO05D004129 2.1e-09 66.6 76 47.4
Lalb_Chr03g0033871 Lupinus albus HOM05D003600 ORTHO05D004129 2.1e-09 66.6 74 45.9
ECA247G3300 Erigeron canadensis HOM05D003600 ORTHO05D004129 2.7e-09 66.2 72 47.2
Lsat_1_v5_gn_1_29881 Lactuca sativa HOM05D003600 ORTHO05D004129 3.5e-09 65.9 72 45.8
Zm00001eb337080 Zea mays HOM05D003600 ORTHO05D004129 3.5e-09 65.9 36 83.3
Gohir.A11G007300 Gossypium hirsutum HOM05D003600 ORTHO05D004129 7.8e-09 64.7 72 45.8
HanXRQChr08g0229041 Helianthus annuus HOM05D003600 ORTHO05D004129 7.8e-09 64.7 69 46.4
CBR_g44488 Chara braunii HOM05D003600 ORTHO05D004129 1.0e-08 64.3 83 42.2
AUR62031839 Chenopodium quinoa HOM05D003600 ORTHO05D004129 1.3e-08 63.9 67 50.7
CARHR275520 Cardamine hirsuta HOM05D003600 ORTHO05D004129 1.7e-08 63.5 71 53.5
Lj3g0018600 Lotus japonicus HOM05D003600 ORTHO05D004129 1.7e-08 63.5 59 52.5
AUR62008871 Chenopodium quinoa HOM05D003600 ORTHO05D004129 3.0e-08 62.8 67 50.7
Eucgr.K03506 Eucalyptus grandis HOM05D003600 ORTHO05D004129 3.0e-08 62.8 72 45.8
Ca_23729_v3 Cicer arietinum L. HOM05D003600 ORTHO05D004129 5.1e-08 62.0 73 47.9
Medtr8g039530 Medicago truncatula HOM05D003600 ORTHO05D004129 5.1e-08 62.0 73 43.8
VMungo1127G0004 Vigna mungo HOM05D003600 ORTHO05D004129 5.1e-08 62.0 72 50.0
Glyma.12G240900 Glycine max HOM05D003600 ORTHO05D004129 8.6e-08 61.2 72 47.2
Lj2g0002901 Lotus japonicus HOM05D003600 ORTHO05D004129 8.6e-08 61.2 73 47.9
Medtr8g032240 Medicago truncatula HOM05D003600 ORTHO05D004129 8.6e-08 61.2 59 49.2
Phvul.011G214900 Phaseolus vulgaris HOM05D003600 ORTHO05D004129 1.5e-07 60.5 72 50.0
CBR_g16917 Chara braunii HOM05D003600 ORTHO05D004129 2.5e-07 59.7 44 56.8
TPR.G9790 Trifolium pratense HOM05D003600 ORTHO05D004129 3.3e-07 59.3 73 47.9


User provided reference genes

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