Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb275710 Zea mays HOM05D003104 ORTHO05D003448 2.3e-102 375.6 190 100.0
Zm00001eb388100 Zea mays HOM05D003104 ORTHO05D003448 1.9e-48 196.4 201 64.2
Os06g0618700 Oryza sativa ssp. japonica HOM05D003104 ORTHO05D003448 5.1e-25 118.6 162 51.2
Zm00001eb275700 Zea mays HOM05D003104 ORTHO05D003448 2.6e-21 106.3 137 54.0
Hma1.2p1_0676F.1_g201970 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 1.2e-10 70.9 177 33.3
QL07p023704 Quercus lobata HOM05D003104 ORTHO05D003448 1.8e-09 67.0 165 37.0
SalBow6G1610 Salvia bowleyana HOM05D003104 ORTHO05D003448 2.3e-09 66.6 166 32.5
SGA_v2.0_scaffold274G46484 Striga asiatica HOM05D003104 ORTHO05D003448 2.3e-09 66.6 134 34.3
Hma1.2p1_0386F.1_g141860 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 3.0e-09 66.2 184 33.2
Dinv14298 Davidia involucrata HOM05D003104 ORTHO05D003448 5.1e-09 65.5 189 29.6
SalBow6G3635 Salvia bowleyana HOM05D003104 ORTHO05D003448 5.1e-09 65.5 175 33.7
SalBow6G4220 Salvia bowleyana HOM05D003104 ORTHO05D003448 5.1e-09 65.5 175 33.7
Oeu060702.1 Olea europaea HOM05D003104 ORTHO05D003448 6.7e-09 65.1 159 32.1
SalBow6G2667 Salvia bowleyana HOM05D003104 ORTHO05D003448 6.7e-09 65.1 166 32.5
DCAR_013546 Daucus carota HOM05D003104 ORTHO05D003448 8.8e-09 64.7 152 36.2
Oeu024480.1 Olea europaea HOM05D003104 ORTHO05D003448 4.4e-08 62.4 144 34.0
TAR623G0313 Trochodendron aralioides HOM05D003104 ORTHO05D003448 4.4e-08 62.4 167 34.1
Lsat_1_v5_gn_9_26201 Lactuca sativa HOM05D003104 ORTHO05D003448 5.7e-08 62.0 134 34.3
CANSAT64G0699 Cannabis sativa HOM05D003104 ORTHO05D003448 7.4e-08 61.6 56 57.1
Duzib128G0074 Durio zibethinus HOM05D003104 ORTHO05D003448 7.4e-08 61.6 155 37.4
ECA247G3561 Erigeron canadensis HOM05D003104 ORTHO05D003448 7.4e-08 61.6 139 33.1
Oeu033738.1 Olea europaea HOM05D003104 ORTHO05D003448 7.4e-08 61.6 153 35.3
HanXRQChr10g0289851 Helianthus annuus HOM05D003104 ORTHO05D003448 1.3e-07 60.8 163 32.5
PGR142G2221 Punica granatum HOM05D003104 ORTHO05D003448 1.3e-07 60.8 112 39.3
Sc13g0002270 Simmondsia chinensis HOM05D003104 ORTHO05D003448 1.3e-07 60.8 61 55.7
Thecc.05G171100 Theobroma cacao HOM05D003104 ORTHO05D003448 1.3e-07 60.8 140 39.3
Cpa.g.sc189.3 Carica papaya HOM05D003104 ORTHO05D003448 1.7e-07 60.5 159 32.1
CAN.G129.49 Capsicum annuum HOM05D003104 ORTHO05D003448 2.2e-07 60.1 34 85.3
Sopen01g033330 Solanum pennellii HOM05D003104 ORTHO05D003448 2.2e-07 60.1 34 85.3
PGSC0003DMG400028983 Solanum tuberosum HOM05D003104 ORTHO05D003448 2.2e-07 60.1 34 85.3
TWI77G0731 Tripterygium wilfordii HOM05D003104 ORTHO05D003448 2.2e-07 60.1 131 35.9
GSVIVG01001356001 Vitis vinifera HOM05D003104 ORTHO05D003448 2.2e-07 60.1 179 33.5
C08p35140 Brassica napus HOM05D003104 ORTHO05D003448 3.7e-07 59.3 145 35.2
Thhalv10001743m.g Eutrema salsugineum HOM05D003104 ORTHO05D003448 3.7e-07 59.3 155 34.8
Sp4g26400 Schrenkiella parvula HOM05D003104 ORTHO05D003448 3.7e-07 59.3 155 34.2
PGSC0003DMG400023709 Solanum tuberosum HOM05D003104 ORTHO05D003448 3.7e-07 59.3 161 31.1
TWI74G1180 Tripterygium wilfordii HOM05D003104 ORTHO05D003448 3.7e-07 59.3 139 33.8
COL.COLO4_33986 Corchorus olitorius HOM05D003104 ORTHO05D003448 4.8e-07 58.9 55 56.4
Haze_19985 Corylus avellana HOM05D003104 ORTHO05D003448 4.8e-07 58.9 156 34.6
Hma1.2p1_0541F.1_g174850 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 4.8e-07 58.9 33 78.8
PGR004G2754 Punica granatum HOM05D003104 ORTHO05D003448 4.8e-07 58.9 35 80.0
Sed0021075 Sechium edule HOM05D003104 ORTHO05D003448 4.8e-07 58.9 60 58.3
TAR636G0094 Trochodendron aralioides HOM05D003104 ORTHO05D003448 4.8e-07 58.9 159 32.7
Atru.chr11.2705 Acer truncatum HOM05D003104 ORTHO05D003448 6.3e-07 58.5 153 32.7
ClCG10G017500 Citrullus lanatus HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
Haze_19986 Corylus avellana HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
MELO3C009629.2 Cucumis melo HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
CsaV3_3G038860 Cucumis sativus L. HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
Gohir.D01G178500 Gossypium hirsutum HOM05D003104 ORTHO05D003448 6.3e-07 58.5 33 81.8
Gorai.002G224500 Gossypium raimondii HOM05D003104 ORTHO05D003448 6.3e-07 58.5 33 81.8
Prupe.2G002600 Prunus persica HOM05D003104 ORTHO05D003448 6.3e-07 58.5 45 66.7
Sed0026082 Sechium edule HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
TAR633G0631 Trochodendron aralioides HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
TAR633G2208 Trochodendron aralioides HOM05D003104 ORTHO05D003448 6.3e-07 58.5 32 84.4
vmacro07909 Vaccinium macrocarpon HOM05D003104 ORTHO05D003448 6.3e-07 58.5 176 30.7
Aqoxy2G00080 Aquilegia oxysepala HOM05D003104 ORTHO05D003448 8.2e-07 58.2 194 32.5
CAN.G128.39 Capsicum annuum HOM05D003104 ORTHO05D003448 8.2e-07 58.2 58 55.2
Migut.J01831 Erythranthe guttata HOM05D003104 ORTHO05D003448 8.2e-07 58.2 61 52.5
FAN14G0351 Fragaria x ananassa HOM05D003104 ORTHO05D003448 8.2e-07 58.2 167 32.9
FAN14G4340 Fragaria x ananassa HOM05D003104 ORTHO05D003448 8.2e-07 58.2 167 32.9
MD12G1057500 Malus domestica HOM05D003104 ORTHO05D003448 8.2e-07 58.2 32 84.4
MD14G1058100 Malus domestica HOM05D003104 ORTHO05D003448 8.2e-07 58.2 155 32.3
Potri.006G192100 Populus trichocarpa HOM05D003104 ORTHO05D003448 8.2e-07 58.2 157 34.4
EL10Ac3g06919 Beta vulgaris HOM05D003104 ORTHO05D003448 1.1e-06 57.8 41 68.3
FvH4_6g22390 Fragaria vesca HOM05D003104 ORTHO05D003448 1.1e-06 57.8 167 32.9
FAN09G1280 Fragaria x ananassa HOM05D003104 ORTHO05D003448 1.1e-06 57.8 167 32.9
Glyma.09G111800 Glycine max HOM05D003104 ORTHO05D003448 1.1e-06 57.8 52 57.7
Medtr2g061720 Medicago truncatula HOM05D003104 ORTHO05D003448 1.1e-06 57.8 61 47.5
Os04g0665900 Oryza sativa ssp. japonica HOM05D003104 ORTHO05D003448 1.1e-06 57.8 32 78.1
BcaC02g09980 Brassica carinata HOM05D003104 ORTHO05D003448 1.4e-06 57.4 52 61.5
C04p34380 Brassica napus HOM05D003104 ORTHO05D003448 1.4e-06 57.4 52 61.5
BolC4t25000H Brassica oleracea HOM05D003104 ORTHO05D003448 1.4e-06 57.4 52 61.5
Migut.B01401 Erythranthe guttata HOM05D003104 ORTHO05D003448 1.4e-06 57.4 34 76.5
Thhalv10006263m.g Eutrema salsugineum HOM05D003104 ORTHO05D003448 1.4e-06 57.4 50 60.0
FAN02G3683 Fragaria x ananassa HOM05D003104 ORTHO05D003448 1.4e-06 57.4 167 32.9
FAN05G4633 Fragaria x ananassa HOM05D006059 ORTHO05D003448 1.4e-06 57.4 166 34.9
Gohir.D04G081500 Gossypium hirsutum HOM05D003104 ORTHO05D003448 1.4e-06 57.4 120 37.5
Rhsim03G0006200 Rhododendron simsii HOM05D003104 ORTHO05D003448 1.4e-06 57.4 149 33.6
RcHm_v2.0_Chr3g0479721 Rosa chinensis HOM05D003104 ORTHO05D003448 1.4e-06 57.4 63 52.4
Sp5g03120 Schrenkiella parvula HOM05D003104 ORTHO05D003448 1.4e-06 57.4 142 38.0
Atru.chr8.1107 Acer truncatum HOM05D003104 ORTHO05D003448 1.8e-06 57.0 149 32.9
Atru.chr8.1109 Acer truncatum HOM05D003104 ORTHO05D003448 1.8e-06 57.0 149 32.9
AL4G43320 Arabidopsis lyrata HOM05D003104 ORTHO05D003448 1.8e-06 57.0 85 43.5
A04p02800 Brassica napus HOM05D003104 ORTHO05D003448 1.8e-06 57.0 52 61.5
BolC4t22162H Brassica oleracea HOM05D003104 ORTHO05D003448 1.8e-06 57.0 108 38.0
CSS0036189 Camellia sinensis var. sinensis HOM05D003104 ORTHO05D003448 1.8e-06 57.0 52 55.8
CARHR168320 Cardamine hirsuta HOM05D003104 ORTHO05D003448 1.8e-06 57.0 145 37.2
Cfa020167 Carpinus fangiana HOM05D003104 ORTHO05D003448 1.8e-06 57.0 32 81.2
Gohir.1Z049368 Gossypium hirsutum HOM05D003104 ORTHO05D003448 1.8e-06 57.0 33 78.8
Hma1.2p1_0128F.1_g059810 Hydrangea macrophylla HOM05D003104 ORTHO05D003448 1.8e-06 57.0 164 33.5
Manes.09G035200 Manihot esculenta HOM05D003104 ORTHO05D003448 1.8e-06 57.0 185 29.7
Oeu041513.1 Olea europaea HOM05D003104 ORTHO05D003448 1.8e-06 57.0 33 75.8
Potri.016G046000 Populus trichocarpa HOM05D003104 ORTHO05D003448 1.8e-06 57.0 32 81.2
Ah.13g075870 Amaranthus hybridus HOM05D003104 ORTHO05D003448 2.4e-06 56.6 34 76.5
BcaC07g40529 Brassica carinata HOM05D003104 ORTHO05D003448 2.4e-06 56.6 145 34.5
BolC8t51109H Brassica oleracea HOM05D003104 ORTHO05D003448 2.4e-06 56.6 145 34.5
CiPaw.09G030500 Carya illinoinensis HOM05D003104 ORTHO05D003448 2.4e-06 56.6 159 36.5
MBI04_g33964_MAGBIO Magnolia biondii HOM05D003104 ORTHO05D003448 2.4e-06 56.6 88 44.3
Sc19g0007090 Simmondsia chinensis HOM05D003104 ORTHO05D003448 2.4e-06 56.6 41 68.3
VMungo0720G0553 Vigna mungo HOM05D003104 ORTHO05D003448 2.4e-06 56.6 37 70.3
GSVIVG01033500001 Vitis vinifera HOM05D003104 ORTHO05D003448 2.4e-06 56.6 32 81.2
AT2G42140 Arabidopsis thaliana HOM05D003104 ORTHO05D003448 3.1e-06 56.2 36 72.2
AT2G44340 Arabidopsis thaliana HOM05D003104 ORTHO05D003448 3.1e-06 56.2 155 32.9
Carub.0005s2484 Capsella rubella HOM05D003104 ORTHO05D003448 3.1e-06 56.2 159 34.6
Lalb_Chr20g0108211 Lupinus albus HOM05D003104 ORTHO05D003448 3.1e-06 56.2 53 56.6
Oeu032786.1 Olea europaea HOM05D003104 ORTHO05D003448 3.1e-06 56.2 32 78.1
Phvul.007G259600 Phaseolus vulgaris HOM05D003104 ORTHO05D003448 3.1e-06 56.2 158 34.2
THA.LOC104802519 Tarenaya hassleriana HOM05D003104 ORTHO05D003448 3.1e-06 56.2 81 43.2
BcaB02g08283 Brassica carinata HOM05D003104 ORTHO05D003448 4.1e-06 55.8 52 59.6
BcaC07g40174 Brassica carinata HOM05D003104 ORTHO05D003448 4.1e-06 55.8 33 78.8
BraA04t16004Z Brassica rapa HOM05D003104 ORTHO05D003448 4.1e-06 55.8 52 61.5
CARHR139500 Cardamine hirsuta HOM05D003104 ORTHO05D003448 4.1e-06 55.8 158 32.3
Eucgr.A02450 Eucalyptus grandis HOM05D003104 ORTHO05D003448 4.1e-06 55.8 32 75.0
Glyma.08G157900 Glycine max HOM05D003104 ORTHO05D003448 4.1e-06 55.8 146 31.5
Lj3g0026667 Lotus japonicus HOM05D003104 ORTHO05D003448 4.1e-06 55.8 108 35.2
Manes.10G152200 Manihot esculenta HOM05D003104 ORTHO05D003448 4.1e-06 55.8 91 40.7
Sabra06G0147200 Salix brachista HOM05D003104 ORTHO05D003448 4.1e-06 55.8 154 33.1
THA.LOC104827575 Tarenaya hassleriana HOM05D003104 ORTHO05D003448 4.1e-06 55.8 113 39.8
A09p50830 Brassica napus HOM05D003104 ORTHO05D003448 5.3e-06 55.5 50 58.0
BolC4t22166H Brassica oleracea HOM05D003104 ORTHO05D003448 5.3e-06 55.5 115 37.4
BolC8t50952H Brassica oleracea HOM05D003104 ORTHO05D003448 5.3e-06 55.5 50 58.0
BraA09t40529Z Brassica rapa HOM05D003104 ORTHO05D003448 5.3e-06 55.5 50 58.0
Dinv43940 Davidia involucrata HOM05D003104 ORTHO05D003448 5.3e-06 55.5 79 45.6
Gohir.A04G055700 Gossypium hirsutum HOM05D003104 ORTHO05D003448 5.3e-06 55.5 120 36.7
Medtr1g054055 Medicago truncatula HOM05D003104 ORTHO05D003448 5.3e-06 55.5 138 31.9
Nn7g36011 Nelumbo nucifera HOM05D003104 ORTHO05D003448 5.3e-06 55.5 32 78.1
PSO384G0475 Papaver somniferum HOM05D003104 ORTHO05D003448 5.3e-06 55.5 61 50.8
Prupe.7G076600 Prunus persica HOM05D003104 ORTHO05D003448 5.3e-06 55.5 148 30.4
Sabra16G0050100 Salix brachista HOM05D003104 ORTHO05D003448 5.3e-06 55.5 161 34.2
THA.LOC104824473 Tarenaya hassleriana HOM05D003104 ORTHO05D003448 5.3e-06 55.5 162 30.9
AL5G39650 Arabidopsis lyrata HOM05D003104 ORTHO05D003448 7.0e-06 55.1 141 36.2
AT3G58000 Arabidopsis thaliana HOM05D003104 ORTHO05D003448 7.0e-06 55.1 141 36.9
BcaC02g12321 Brassica carinata HOM05D003104 ORTHO05D003448 7.0e-06 55.1 115 37.4
C04p05210 Brassica napus HOM05D003104 ORTHO05D003448 7.0e-06 55.1 108 37.0
C04p05240 Brassica napus HOM05D003104 ORTHO05D003448 7.0e-06 55.1 115 37.4
Carub.0004s2448 Capsella rubella HOM05D003104 ORTHO05D003448 7.0e-06 55.1 36 69.4
Ciclev10013474m.g Citrus clementina HOM05D003104 ORTHO05D003448 7.0e-06 55.1 164 31.1
Gorai.006G068000 Gossypium raimondii HOM05D003104 ORTHO05D003448 7.0e-06 55.1 120 36.7
Nn2g15676 Nelumbo nucifera HOM05D003104 ORTHO05D003448 7.0e-06 55.1 48 58.3
PSO339G2298 Papaver somniferum HOM05D003104 ORTHO05D003448 7.0e-06 55.1 90 40.0
THA.LOC104802532 Tarenaya hassleriana HOM05D003104 ORTHO05D003448 7.0e-06 55.1 164 31.1
BraA05t19426Z Brassica rapa HOM05D003104 ORTHO05D003448 9.1e-06 54.7 115 37.4
CiPaw.10G026700 Carya illinoinensis HOM05D003104 ORTHO05D003448 9.1e-06 54.7 171 31.0
Duzib093G0308 Durio zibethinus HOM05D003104 ORTHO05D003448 9.1e-06 54.7 144 35.4


User provided reference genes

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