Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 1.1e-251 872.8 452 100.0
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 5.6e-171 604.7 454 74.9
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 1.4e-126 457.2 470 59.1
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 9.9e-67 258.5 463 40.2
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.9e-65 254.2 410 41.2
CDE12G0302 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 5.4e-65 252.7 438 39.0
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 9.2e-65 251.9 504 38.9
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.6e-64 251.1 422 40.5
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 3.5e-64 250.0 493 37.7
MD04G1069800 Malus domestica HOM05D003389 ORTHO05D003917 6.0e-64 249.2 331 45.9
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 2.3e-63 247.3 318 49.4
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 2.3e-63 247.3 487 38.4
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 2.3e-63 247.3 479 37.4
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 3.9e-63 246.5 463 39.3
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 5.1e-63 246.1 317 48.9
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 4.3e-62 243.0 501 37.7
MD06G1071200 Malus domestica HOM05D003389 ORTHO05D003917 6.2e-61 239.2 323 45.5
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.1e-60 238.4 498 37.8
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 1.8e-60 237.7 314 44.3
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 1.8e-60 237.7 413 39.2
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 3.1e-60 236.9 313 50.5
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 8.9e-60 235.3 357 44.0
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 1.5e-59 234.6 502 37.3
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 1.5e-59 234.6 261 55.9
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 2.6e-59 233.8 466 38.2
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.4e-59 233.4 306 45.4
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 3.4e-59 233.4 417 38.8
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 5.8e-59 232.6 452 38.1
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 7.6e-59 232.3 497 35.2
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 7.6e-59 232.3 365 43.3
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 7.6e-59 232.3 262 53.1
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 9.9e-59 231.9 403 39.2
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 1.3e-58 231.5 295 47.5
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 1.3e-58 231.5 306 47.7
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.7e-58 231.1 370 43.0
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.7e-58 231.1 306 44.8
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-58 230.7 271 53.5
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 2.2e-58 230.7 332 43.7
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 2.9e-58 230.3 412 39.1
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 2.9e-58 230.3 308 45.8
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 3.8e-58 229.9 468 37.6
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 4.9e-58 229.6 392 39.8
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 4.9e-58 229.6 303 48.5
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 6.4e-58 229.2 271 53.1
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 1.1e-57 228.4 406 37.9
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 1.4e-57 228.0 497 36.8
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 1.9e-57 227.6 326 44.2
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 2.4e-57 227.3 324 43.5
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 4.2e-57 226.5 409 38.1
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 5.4e-57 226.1 497 37.6
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 9.2e-57 225.3 328 42.7
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 9.2e-57 225.3 312 44.6
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 2.1e-56 224.2 488 37.3
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 2.1e-56 224.2 498 36.7
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 2.1e-56 224.2 483 36.2
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 2.7e-56 223.8 309 44.3
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 3.5e-56 223.4 353 41.9
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 7.8e-56 222.2 341 46.0
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 1.0e-55 221.9 425 40.0
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 2.3e-55 220.7 479 35.5
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 3.9e-55 219.9 484 35.7
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 5.1e-55 219.5 272 51.1
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 5.1e-55 219.5 313 48.6
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 5.1e-55 219.5 464 38.6
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 5.1e-55 219.5 264 50.0
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 6.6e-55 219.2 306 46.4
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 8.7e-55 218.8 247 51.4
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 1.5e-54 218.0 313 42.5
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.5e-54 218.0 268 48.5
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 1.9e-54 217.6 285 49.1
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 2.5e-54 217.2 438 37.2
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 5.6e-54 216.1 374 43.6
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 7.3e-54 215.7 276 50.7
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 9.6e-54 215.3 284 51.4
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 9.6e-54 215.3 493 34.3
Cpa.g.sc29.32 Carica papaya HOM05D003389 ORTHO05D003917 1.6e-53 214.5 245 49.4
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 2.1e-53 214.2 480 35.4
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 3.6e-53 213.4 289 48.8
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 6.2e-53 212.6 362 39.0
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.2e-53 212.6 484 36.2
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.1e-52 211.8 302 42.4
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.4e-52 211.5 490 36.7
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.8e-52 211.1 329 43.2
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.8e-52 211.1 490 36.7
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.8e-52 211.1 229 52.0
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 5.3e-52 209.5 478 33.3
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 6.9e-52 209.1 482 35.7
Rhsim11G0008000 Rhododendron simsii HOM05D003389 ORTHO05D003917 6.9e-52 209.1 277 45.8
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 9.0e-52 208.8 275 48.4
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 2.6e-51 207.2 339 41.0
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 3.4e-51 206.8 310 42.6
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 4.4e-51 206.5 273 48.7
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 9.9e-51 205.3 410 39.0
Lalb_Chr05g0214741 Lupinus albus HOM05D003389 ORTHO05D003917 2.2e-50 204.1 183 57.4
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 4.9e-50 203.0 343 43.1
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.1e-49 201.8 416 38.5
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 1.1e-49 201.8 461 34.7
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 2.4e-49 200.7 334 41.3
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 3.2e-49 200.3 231 46.3
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 9.3e-49 198.7 266 47.0
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 1.6e-48 198.0 297 45.1
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 1.6e-48 198.0 261 46.4
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 4.6e-48 196.4 249 48.2
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 6.0e-48 196.1 238 54.2
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 1.7e-47 194.5 410 36.1
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 3.9e-47 193.4 338 38.2
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 5.1e-47 193.0 262 44.3
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 8.7e-47 192.2 380 35.3
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 1.1e-46 191.8 409 35.2
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 2.5e-46 190.7 313 40.3
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 2.5e-46 190.7 313 40.3
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 2.5e-46 190.7 313 40.3
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 3.3e-46 190.3 218 50.5
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 4.3e-46 189.9 260 45.8
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 4.3e-46 189.9 218 49.1
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 2.8e-45 187.2 414 34.8
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 1.1e-44 185.3 277 45.8
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.2e-43 181.8 318 39.9
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.5e-43 181.4 307 42.3
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 9.9e-43 178.7 204 51.0
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 2.2e-42 177.6 386 35.8
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 4.9e-42 176.4 272 43.4
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 8.4e-42 175.6 296 40.5
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 1.1e-41 175.3 260 43.1
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 1.9e-41 174.5 448 34.6
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 5.4e-41 172.9 283 41.0
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.2e-40 171.8 398 36.4
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.6e-40 171.4 268 39.6
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 2.7e-40 170.6 200 50.5
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 2.3e-39 167.5 365 34.8
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 6.7e-39 166.0 174 51.7
TAR636G1472 Trochodendron aralioides HOM05D003389 ORTHO05D003917 4.3e-38 163.3 278 38.5
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 1.3e-37 161.8 246 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 1.6e-37 161.4 272 39.7
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 2.1e-37 161.0 507 31.6
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.8e-37 159.8 220 44.1
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 9.0e-36 155.6 194 45.9
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 2.2e-34 151.0 174 48.3
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 8.4e-34 149.1 174 47.7
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.4e-33 148.3 239 40.6
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 2.1e-32 144.4 230 40.0
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 1.5e-30 138.3 236 36.9
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 1.9e-30 137.9 236 36.9
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 4.3e-30 136.7 383 28.5
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.3e-29 135.2 176 42.6
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 1.3e-29 135.2 176 42.6
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 1.3e-29 135.2 176 42.6
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 1.3e-29 135.2 214 41.6
FAN09G0964 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.4e-28 131.7 260 37.3
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 4.5e-27 126.7 146 41.1
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 1.0e-26 125.6 89 64.0
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 1.4e-25 121.7 414 28.3
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.4e-25 121.7 147 44.2
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 2.1e-24 117.9 160 44.4
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.3e-23 114.4 84 70.2
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 2.5e-22 110.9 199 39.2
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 4.3e-22 110.2 160 40.6
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.3e-21 108.6 232 36.2
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 4.8e-21 106.7 146 37.0
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 6.3e-21 106.3 82 57.3
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 3.1e-20 104.0 365 25.8
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 9.0e-20 102.4 353 26.6
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 2.0e-19 101.3 78 57.7
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 7.7e-19 99.4 138 36.2
VMungo1383G1658 Vigna mungo HOM05D003389 ORTHO05D003917 2.5e-17 94.4 84 54.8
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.2e-16 92.0 121 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1756 Anthoceros agrestis HOM05D003389 ORTHO05D003917 1.6e-16 91.7 83 54.2
Glyma.11G000066 Glycine max HOM05D003389 ORTHO05D003917 3.6e-16 90.5 205 37.1
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 6.7e-15 86.3 137 34.3
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 3.3e-14 84.0 86 46.5
Actinidia27413 Actinidia chinensis HOM05D003389 ORTHO05D003917 1.7e-13 81.6 129 41.1
Zm00001eb033330 Zea mays HOM05D024566 ORTHO05D020930 1.1e-12 79.0 88 48.9
Glyma.03G265002 Glycine max HOM05D003389 ORTHO05D003917 1.8e-12 78.2 209 34.0
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 1.8e-12 78.2 77 51.9
BraA03t14599Z Brassica rapa HOM05D003389 ORTHO05D003917 1.5e-11 75.1 73 49.3
SGA_v2.0_scaffold555G52910 Striga asiatica HOM05D024566 ORTHO05D020930 2.9e-10 70.9 88 45.5
Aqoxy1G01439 Aquilegia oxysepala HOM05D001108 ORTHO05D001619 1.4e-09 68.6 112 39.3
Cfa025567 Carpinus fangiana HOM05D003389 ORTHO05D003917 2.7e-08 64.3 101 34.7
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 3.6e-08 63.9 93 34.4
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 3.6e-08 63.9 93 34.4
DCAR_022883 Daucus carota HOM05D064377 ORTHO05D003917 7.9e-08 62.8 95 36.8


User provided reference genes

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