Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.6e-89 331.3 175 100.0
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 9.7e-71 270.4 175 82.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 7.7e-68 260.8 176 80.1
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.9e-67 258.8 175 81.1
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 3.8e-51 205.3 175 69.7
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 6.1e-41 171.4 110 83.6
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 2.6e-39 166.0 107 81.3
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 3.9e-35 152.1 146 54.1
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 8.6e-35 151.0 107 75.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.9e-29 133.3 168 45.8
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.5e-28 129.0 160 45.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.3e-27 127.1 160 46.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.1e-26 124.0 160 46.2
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.5e-26 123.6 160 45.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.5e-26 123.6 146 43.8
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 2.5e-26 122.9 176 43.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 2.5e-26 122.9 133 58.6
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.6e-26 121.7 160 43.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.6e-26 121.7 160 43.8
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 7.3e-26 121.3 175 40.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 7.3e-26 121.3 176 43.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 9.5e-26 120.9 163 42.9
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.5e-26 120.9 160 43.8
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.5e-26 120.9 160 43.8
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 9.5e-26 120.9 160 43.8
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 9.5e-26 120.9 175 49.7
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-25 120.6 175 40.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.6e-25 120.2 176 42.6
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.1e-25 119.8 176 44.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.1e-25 119.8 146 44.5
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.8e-25 119.4 176 42.6
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.8e-25 119.4 160 44.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.8e-25 119.4 175 41.1
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 4.7e-25 118.6 162 43.2
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.2e-25 118.2 175 40.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 6.2e-25 118.2 146 43.8
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 8.1e-25 117.9 160 43.8
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 8.1e-25 117.9 162 42.6
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.1e-24 117.5 175 41.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.1e-24 117.5 175 41.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.1e-24 117.5 160 43.1
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.1e-24 117.5 146 44.5
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.1e-24 117.5 160 42.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-24 117.1 175 41.7
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.4e-24 117.1 175 41.7
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.4e-24 117.1 146 44.5
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.4e-24 117.1 160 43.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.4e-24 117.1 160 43.1
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.4e-24 117.1 161 41.6
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-24 116.7 175 41.7
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.8e-24 116.7 175 41.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.8e-24 116.7 176 41.5
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.8e-24 116.7 176 41.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.7
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.7
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 40.6
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.1
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.1
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-24 116.3 176 41.5
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.3e-24 116.3 160 43.8
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.3e-24 116.3 160 42.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.3e-24 116.3 175 41.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.3e-24 116.3 162 42.0
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 4.0e-24 115.5 175 40.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 4.0e-24 115.5 175 40.6
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 4.0e-24 115.5 175 41.1
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 4.0e-24 115.5 175 41.1
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 5.2e-24 115.2 176 40.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 6.8e-24 114.8 146 43.2
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 6.8e-24 114.8 160 43.8
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 6.8e-24 114.8 176 40.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 6.8e-24 114.8 159 43.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 8.9e-24 114.4 161 39.8
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.2e-23 114.0 175 39.4
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.0e-23 113.2 175 41.1
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.0e-23 113.2 176 39.2
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 2.6e-23 112.8 160 41.2
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.6e-23 112.8 146 40.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.6e-23 112.8 146 40.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.6e-23 112.8 160 41.2
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.6e-23 112.8 160 41.2
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 3.4e-23 112.5 176 40.9
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 3.4e-23 112.5 160 42.5
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.4e-23 112.5 161 42.2
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.4e-23 112.1 160 40.0
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 4.4e-23 112.1 176 40.3
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 4.4e-23 112.1 160 41.2
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 5.8e-23 111.7 175 39.4
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.5e-23 111.3 146 42.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 7.5e-23 111.3 176 39.8
Zm00001eb332080 Zea mays HOM05D004657 ORTHO05D005562 9.8e-23 110.9 74 83.8
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-22 110.5 176 39.2
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.7e-22 110.2 160 41.2
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.7e-22 110.2 137 44.5
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.2e-22 109.8 160 41.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.2e-22 109.8 160 42.5
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 2.2e-22 109.8 160 40.0
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.9e-22 109.4 147 41.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 4.9e-22 108.6 175 38.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 6.4e-22 108.2 175 37.7
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 8.3e-22 107.8 148 41.2
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-21 107.5 176 38.1
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.4e-21 107.1 176 38.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.4e-21 107.1 147 40.1
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.4e-21 107.1 147 40.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-21 107.1 147 40.1
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.4e-21 107.1 140 40.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.4e-21 106.3 176 39.2
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 3.2e-21 105.9 146 41.8
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.2e-21 105.9 147 40.8
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 3.2e-21 105.9 175 37.7
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.1e-21 105.5 160 39.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 5.4e-21 105.1 161 39.8
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 7.1e-21 104.8 160 39.4
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 7.1e-21 104.8 65 80.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.6e-20 103.6 154 38.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 2.1e-20 103.2 147 39.5
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.1e-20 103.2 160 38.8
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 7.8e-20 101.3 160 38.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 7.8e-20 101.3 175 36.6
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.0e-19 100.9 147 38.1
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 2.3e-19 99.8 158 37.3
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 3.0e-19 99.4 160 38.1
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 5.1e-19 98.6 146 37.0
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.5e-18 96.3 161 36.0
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.5e-18 94.4 160 36.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 3.6e-17 92.4 175 34.9
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 8.1e-17 91.3 151 37.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.4e-16 90.5 58 89.7
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 1.8e-16 90.1 146 36.3
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.8e-16 90.1 147 37.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.8e-16 90.1 142 35.9
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.2e-15 87.4 121 38.0
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.6e-15 86.3 175 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 7.6e-15 84.7 146 36.3
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.3e-14 84.0 159 35.8
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.2e-14 83.2 146 35.6
Zm00001eb310240 Zea mays HOM05D004657 ORTHO05D005562 3.7e-14 82.4 92 56.5
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.4e-13 79.7 133 34.6
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.1e-13 79.0 145 33.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.5e-12 75.9 96 41.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.3e-11 73.2 81 44.4
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.1e-11 72.0 157 35.0
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.6e-07 59.7 149 31.5
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.6e-07 59.7 46 76.1
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 5.8e-07 58.5 147 31.3


User provided reference genes

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