Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.5e-152 542.7 264 100.0
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 8.5e-111 404.1 246 78.9
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.3e-95 353.6 273 64.8
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.5e-94 350.1 240 70.8
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 4.2e-94 348.6 241 67.2
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 9.4e-94 347.4 252 66.3
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.2e-93 347.1 250 67.2
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.7e-93 345.1 239 68.2
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.1e-93 344.7 250 66.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.0e-92 344.0 245 69.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.4e-92 343.6 242 66.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.3e-92 342.8 255 65.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.0e-92 342.0 260 65.0
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.0e-92 342.0 246 65.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 8.8e-92 340.9 243 67.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-91 340.5 243 66.7
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.5e-91 340.1 244 65.2
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.6e-91 339.3 237 70.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.4e-91 339.0 243 65.0
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.4e-91 339.0 250 64.4
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.4e-91 339.0 244 66.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 7.5e-91 337.8 238 66.0
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 7.5e-91 337.8 250 62.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.3e-90 337.0 253 64.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.2e-90 336.3 239 66.1
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.2e-90 336.3 242 68.2
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.2e-90 336.3 249 66.3
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.2e-90 336.3 253 64.0
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.8e-90 335.9 237 67.1
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.8e-90 335.9 242 64.0
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.8e-90 335.9 239 68.2
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 3.7e-90 335.5 237 68.8
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.8e-90 335.1 242 64.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 6.3e-90 334.7 238 67.6
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 6.3e-90 334.7 251 63.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-89 333.6 251 62.9
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.8e-89 333.2 242 67.4
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.8e-89 333.2 240 68.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.1e-89 332.4 239 65.7
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.1e-89 332.4 251 63.3
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.1e-89 332.0 247 64.0
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.1e-89 332.0 220 68.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.1e-89 332.0 259 63.7
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.4e-89 331.6 264 63.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.4e-89 331.6 247 63.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.4e-89 331.6 247 66.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 7.0e-89 331.3 250 63.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 7.0e-89 331.3 261 62.8
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 7.0e-89 331.3 253 64.0
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.2e-88 330.5 251 64.9
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.6e-88 330.1 251 64.9
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-88 330.1 243 64.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.6e-88 330.1 253 66.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.6e-88 330.1 252 65.5
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.0e-88 329.7 241 65.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.5e-88 328.9 253 66.0
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.5e-88 328.6 239 64.9
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.5e-88 328.6 239 64.9
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 5.9e-88 328.2 244 64.8
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 7.7e-88 327.8 249 64.3
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.7e-88 327.8 260 62.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.3e-87 327.0 237 62.4
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.3e-87 327.0 259 62.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.3e-87 327.0 254 64.2
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.9e-87 325.9 222 68.5
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.9e-86 323.2 261 61.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-86 322.4 242 64.0
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.2e-86 322.0 257 61.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 5.5e-86 321.6 251 64.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.6e-85 320.1 252 62.7
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 4.7e-85 318.5 246 63.0
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.7e-85 318.5 252 62.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 6.1e-85 318.2 248 62.1
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 6.1e-85 318.2 250 61.2
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 6.1e-85 318.2 236 62.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 6.1e-85 318.2 246 63.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 8.0e-85 317.8 260 60.8
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 8.0e-85 317.8 273 59.7
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 8.0e-85 317.8 250 61.2
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.4e-84 317.0 266 59.0
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.3e-84 316.2 245 64.1
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 3.0e-84 315.8 237 63.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.0e-84 315.8 276 57.6
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 4.0e-84 315.5 265 60.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.0e-84 315.5 245 63.7
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 6.8e-84 314.7 265 60.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-83 313.9 239 61.9
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 5.7e-83 311.6 251 59.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 7.5e-83 311.2 246 61.0
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 9.8e-83 310.8 247 59.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 9.8e-83 310.8 245 60.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.8e-83 310.8 254 60.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.9e-82 308.5 248 62.1
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.3e-82 308.1 193 71.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.3e-82 307.8 238 62.6
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 8.3e-82 307.8 229 65.1
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-81 307.4 238 61.3
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.4e-81 306.2 250 61.6
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.1e-81 305.8 239 63.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.4e-81 305.1 221 67.0
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.2e-81 304.3 237 62.0
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.2e-80 303.9 193 67.9
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-80 303.5 237 61.2
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.7e-80 302.8 237 60.8
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 5.9e-80 301.6 193 69.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.3e-79 300.4 244 59.8
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.3e-79 299.7 193 69.4
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 4.3e-78 295.4 237 59.1
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 4.3e-78 295.4 220 61.4
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.3e-76 289.7 199 63.8
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.0e-76 288.9 239 59.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-75 287.3 238 61.3
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.2e-75 287.3 242 60.3
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.6e-75 286.2 193 66.3
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 5.7e-75 285.0 231 60.2
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-74 283.5 221 60.6
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.2e-73 279.3 170 72.4
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.7e-72 276.2 210 64.3
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.8e-72 274.6 206 61.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.5e-70 270.4 220 59.5
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.6e-69 266.9 250 55.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.1e-68 262.7 203 63.1
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.8e-67 258.5 247 56.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.7e-66 256.9 207 59.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-66 256.5 175 67.4
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 7.0e-65 251.5 146 74.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.3e-62 242.7 166 64.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-61 240.4 209 56.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-61 240.0 221 53.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.2e-61 238.4 175 64.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.6e-59 233.0 235 52.3
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.9e-58 229.6 140 71.4
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.4e-57 226.5 130 76.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.2e-57 224.6 199 56.8
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 6.0e-56 221.9 282 43.6
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.6e-55 218.0 261 47.1
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.6e-54 215.3 315 41.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 4.7e-53 212.2 123 74.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 5.2e-52 208.8 286 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 4.4e-51 205.7 254 45.3
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-49 199.9 247 45.7
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-47 193.7 194 50.5
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 3.9e-47 192.6 160 59.4
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.8e-44 181.8 276 39.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.2e-43 181.0 171 48.5
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 4.5e-35 152.5 119 59.7
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-34 150.2 84 77.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.2e-34 150.2 170 49.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.9e-34 149.8 89 73.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.2e-33 146.4 76 93.4
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 7.1e-33 145.2 76 93.4
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 6.0e-32 142.1 187 43.9
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 6.6e-31 138.7 84 67.9
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 6.9e-28 128.6 103 58.3
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.2e-26 123.6 185 40.5
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 7.9e-24 115.2 112 47.3
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 3.8e-18 96.3 232 31.0
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 4.9e-18 95.9 154 33.1
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.5e-16 89.7 148 40.5
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.7e-10 70.9 77 51.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.2e-09 66.6 84 40.5
Zm00001eb140780 Zea mays HOM05D002669 ORTHO05D003001 1.2e-08 64.7 34 91.2
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.6e-08 63.2 73 50.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.3e-06 56.6 41 53.7
Zm00001eb107580 Zea mays HOM05D000367 ORTHO05D001227 7.4e-06 55.5 27 96.3


User provided reference genes

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