Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 3.1e-23 110.9 55 100.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.2e-22 109.0 53 100.0
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 3.0e-18 94.4 53 86.8
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 3.9e-18 94.0 53 83.0
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 6.7e-18 93.2 53 84.9
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 8.7e-18 92.8 53 84.9
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.5e-17 92.0 53 81.1
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.5e-17 92.0 53 84.9
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.9e-17 91.7 53 83.0
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.9e-17 91.7 53 83.0
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.3e-17 90.9 53 81.1
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 3.3e-17 90.9 53 81.1
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 5.7e-17 90.1 53 81.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.7e-17 90.1 53 81.1
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.7e-17 90.1 53 81.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 7.4e-17 89.7 53 81.1
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 7.4e-17 89.7 53 81.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 9.6e-17 89.4 53 79.2
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 9.6e-17 89.4 53 81.1
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 9.6e-17 89.4 53 81.1
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 9.6e-17 89.4 53 81.1
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 79.2
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 79.2
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.3e-16 89.0 53 81.1
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.6e-16 88.6 53 79.2
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 79.2
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 79.2
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 77.4
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 77.4
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 79.2
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 79.2
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.1e-16 88.2 53 79.2
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.8e-16 87.8 53 79.2
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 2.8e-16 87.8 53 79.2
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 79.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 79.2
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 79.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 79.2
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 77.4
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 77.4
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 3.7e-16 87.4 53 81.1
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 4.8e-16 87.0 53 79.2
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.8e-16 87.0 53 77.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 4.8e-16 87.0 53 77.4
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 6.2e-16 86.7 53 77.4
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 6.2e-16 86.7 53 77.4
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 77.4
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 77.4
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 79.2
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 79.2
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 75.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 77.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 8.2e-16 86.3 53 77.4
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 77.4
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 79.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 79.2
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 77.4
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 77.4
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.1e-15 85.9 53 77.4
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.4e-15 85.5 53 75.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.4e-15 85.5 53 73.6
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.8e-15 85.1 53 77.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.8e-15 85.1 53 77.4
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.8e-15 85.1 53 73.6
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.4e-15 84.7 53 77.4
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.4e-15 84.7 53 77.4
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 2.4e-15 84.7 53 77.4
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.4e-15 84.7 53 73.6
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.1e-15 84.3 53 75.5
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 4.0e-15 84.0 53 77.4
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.0e-15 84.0 53 77.4
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.0e-15 84.0 53 77.4
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.0e-15 84.0 53 77.4
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 4.0e-15 84.0 53 71.7
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 5.3e-15 83.6 53 75.5
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 5.3e-15 83.6 53 73.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 6.9e-15 83.2 53 73.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 9.0e-15 82.8 53 73.6
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 9.0e-15 82.8 53 73.6
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 9.0e-15 82.8 53 73.6
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.2e-14 82.4 53 75.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.2e-14 82.4 53 75.5
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.5e-14 82.0 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 2.0e-14 81.6 53 69.8
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 2.0e-14 81.6 53 73.6
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.3e-13 79.0 58 69.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.7e-13 78.6 53 69.8
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.2e-13 78.2 58 69.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.2e-13 78.2 53 69.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.2e-13 78.2 53 69.8
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.0e-10 69.3 62 58.1
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.1e-09 65.9 52 57.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.7e-08 60.8 53 49.1
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 8.2e-08 59.7 34 76.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.4e-07 58.9 33 78.8
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.9e-07 56.6 38 73.7
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 6.9e-07 56.6 53 49.1
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 6.9e-07 56.6 37 70.3


User provided reference genes

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