Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 5.9e-74 280.8 143 100.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 5.9e-74 280.8 143 100.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 6.3e-68 260.8 130 100.0
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 4.4e-53 211.5 126 81.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 2.9e-49 198.7 126 78.6
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.5e-48 195.7 130 71.5
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.5e-48 195.7 123 74.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 9.4e-48 193.7 127 72.4
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.1e-47 192.6 123 75.6
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.1e-47 192.6 129 70.5
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 3.6e-47 191.8 123 74.8
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 4.7e-47 191.4 130 70.8
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 4.7e-47 191.4 127 71.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 6.1e-47 191.0 126 73.8
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 6.1e-47 191.0 127 71.7
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.0e-47 190.7 127 71.7
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.0e-47 190.7 127 70.9
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 8.0e-47 190.7 123 74.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.0e-46 190.3 127 68.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.0e-46 190.3 127 70.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.4e-46 189.9 127 70.9
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.8e-46 189.5 123 74.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.3e-46 189.1 123 73.2
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.0e-46 188.7 123 75.6
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 3.0e-46 188.7 127 70.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 3.0e-46 188.7 129 67.4
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.0e-46 188.7 127 70.1
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 5.2e-46 188.0 123 74.8
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 5.2e-46 188.0 123 74.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 5.2e-46 188.0 127 68.5
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 5.2e-46 188.0 125 70.4
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 5.2e-46 188.0 127 70.9
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 5.2e-46 188.0 130 69.2
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 5.2e-46 188.0 127 70.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 6.8e-46 187.6 130 70.0
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 8.8e-46 187.2 123 74.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 8.8e-46 187.2 123 74.8
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 8.8e-46 187.2 123 74.8
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 8.8e-46 187.2 123 72.4
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 8.8e-46 187.2 127 67.7
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 8.8e-46 187.2 125 69.6
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 8.8e-46 187.2 129 69.8
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.2e-45 186.8 123 74.0
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.2e-45 186.8 123 74.0
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.2e-45 186.8 123 74.0
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.2e-45 186.8 123 72.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.2e-45 186.8 133 66.9
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.5e-45 186.4 129 69.8
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.5e-45 186.4 129 69.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.5e-45 186.4 123 69.9
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.5e-45 186.4 123 74.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.0e-45 186.0 123 74.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 2.6e-45 185.7 129 69.8
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.6e-45 185.7 123 72.4
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.6e-45 185.7 121 76.0
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.4e-45 185.3 123 73.2
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.4e-45 185.3 123 73.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 3.4e-45 185.3 123 73.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.4e-45 185.3 123 73.2
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.4e-45 184.9 129 68.2
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.4e-45 184.9 129 67.4
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 4.4e-45 184.9 128 66.4
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 5.7e-45 184.5 124 69.4
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 5.7e-45 184.5 123 74.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 5.7e-45 184.5 123 69.9
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 7.5e-45 184.1 123 74.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 7.5e-45 184.1 123 69.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 9.8e-45 183.7 128 68.8
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 9.8e-45 183.7 127 67.7
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 9.8e-45 183.7 123 69.9
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.3e-44 183.3 123 68.3
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.3e-44 183.3 123 69.1
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.3e-44 183.3 123 73.2
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.7e-44 183.0 123 70.7
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.7e-44 183.0 123 72.4
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.7e-44 183.0 127 68.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 2.2e-44 182.6 123 69.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 2.2e-44 182.6 123 69.9
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.2e-44 182.6 127 66.9
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.8e-44 182.2 123 68.3
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.8e-44 182.2 123 69.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.8e-44 182.2 127 70.1
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 2.8e-44 182.2 123 70.7
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.7e-44 181.8 140 65.7
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.7e-44 181.8 123 71.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.7e-44 181.8 127 66.9
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 3.7e-44 181.8 123 69.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 6.3e-44 181.0 123 70.7
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 8.3e-44 180.6 123 69.1
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 3.1e-43 178.7 130 63.1
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.7e-42 174.1 150 60.0
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.7e-41 172.9 123 66.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.9e-40 169.5 121 65.3
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.3e-40 168.7 123 67.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.2e-39 166.8 125 63.2
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.8e-39 165.6 121 64.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.8e-39 165.6 121 64.5
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 3.6e-39 165.2 133 58.6
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.8e-38 162.9 121 63.6
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.2e-38 161.4 124 62.1
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 1.2e-37 160.2 156 53.8
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.0e-37 159.5 123 61.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.7e-36 155.2 126 60.3
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 6.3e-36 154.5 124 59.7
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.6e-33 144.4 123 61.0
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 8.6e-33 144.1 123 57.7
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 7.3e-32 141.0 127 57.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.1e-31 139.4 96 70.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 6.4e-28 127.9 136 50.0
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 8.6e-25 117.5 94 60.6
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.9e-24 116.3 126 49.2
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.6e-23 113.2 102 55.9
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 8.0e-23 110.9 127 46.5
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.4e-22 110.2 77 68.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.7e-20 103.2 75 66.7
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 8.3e-20 100.9 75 64.0
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.6e-18 96.7 86 57.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 4.6e-18 95.1 112 43.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 4.6e-18 95.1 112 43.8
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.9e-17 92.0 64 64.1
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 5.6e-16 88.2 100 47.0
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.6e-13 79.3 94 40.4
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 7.5e-13 77.8 60 60.0
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 4.9e-12 75.1 43 79.1
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.9e-11 73.2 73 47.9
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.0e-09 65.9 38 78.9
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 6.6e-09 64.7 50 60.0
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 4.0e-06 55.5 36 80.6


User provided reference genes

Program Settings