Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb269670 Zea mays HOM05D013792 ORTHO05D011318 1.3e-114 416.4 205 100.0
Zm00001eb109010 Zea mays HOM05D013792 ORTHO05D011318 8.3e-114 413.7 205 99.5
Zm00001eb229660 Zea mays HOM05D013792 ORTHO05D011318 1.7e-90 336.3 179 93.3
Zm00001eb124990 Zea mays HOM05D013792 ORTHO05D011318 1.4e-89 333.2 199 85.9
Zm00001eb036690 Zea mays HOM05D013792 ORTHO05D011318 1.1e-86 323.6 199 83.9
Zm00001eb241250 Zea mays HOM05D013792 ORTHO05D011318 1.1e-86 323.6 199 83.9
Zm00001eb399740 Zea mays HOM05D013792 ORTHO05D011318 1.1e-86 323.6 199 83.9
Zm00001eb133310 Zea mays HOM05D013792 ORTHO05D011318 6.2e-85 317.8 199 82.9
Zm00001eb020230 Zea mays HOM05D013792 ORTHO05D011318 3.3e-62 242.3 154 79.9
Zm00001eb017490 Zea mays HOM05D013792 ORTHO05D011318 5.3e-60 235.0 167 73.7
Zm00001eb184350 Zea mays HOM05D013792 ORTHO05D011318 1.4e-57 226.9 139 84.2
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 6.3e-21 105.1 124 47.6
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 4.1e-20 102.4 163 36.2
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.9e-17 93.6 137 41.6
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.5e-17 93.2 108 43.5
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.2e-17 92.8 126 42.9
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 5.5e-17 92.0 88 52.3
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 9.5e-17 91.3 126 42.1
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.2e-16 90.9 114 46.5
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 1.6e-16 90.5 128 43.8
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 2.8e-16 89.7 88 50.0
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.8e-16 89.7 88 51.1
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 4.7e-16 89.0 88 50.0
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 6.1e-16 88.6 88 51.1
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.4e-15 87.4 106 42.5
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.3e-15 86.7 126 41.3
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 3.0e-15 86.3 88 48.9
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.0e-15 86.3 126 41.3
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 5.2e-15 85.5 164 37.8
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 5.2e-15 85.5 126 38.9
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.8e-15 85.1 88 48.9
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.8e-15 85.1 88 48.9
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.8e-15 85.1 126 40.5
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 6.8e-15 85.1 88 48.9
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 6.8e-15 85.1 88 48.9
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 6.8e-15 85.1 164 34.8
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 8.8e-15 84.7 107 42.1
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 8.8e-15 84.7 157 35.0
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 1.2e-14 84.3 95 47.4
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.5e-14 84.0 138 37.0
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.5e-14 84.0 88 47.7
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.5e-14 84.0 105 43.8
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 2.0e-14 83.6 88 48.9
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 2.6e-14 83.2 110 42.7
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 3.4e-14 82.8 99 47.5
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.4e-14 82.8 88 48.9
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.4e-14 82.8 88 48.9
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 3.4e-14 82.8 88 47.7
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 4.4e-14 82.4 120 40.0
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 5.7e-14 82.0 88 47.7
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 5.7e-14 82.0 112 44.6
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 5.7e-14 82.0 112 44.6
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 9.8e-14 81.3 88 47.7
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 9.8e-14 81.3 88 48.9
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 1.3e-13 80.9 88 47.7
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 1.3e-13 80.9 88 44.3
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.3e-13 80.9 91 48.4
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 1.3e-13 80.9 88 47.7
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 1.7e-13 80.5 88 46.6
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 1.7e-13 80.5 120 40.8
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 2.2e-13 80.1 182 33.0
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 3.7e-13 79.3 89 44.9
TPR.G6160 Trifolium pratense HOM05D001944 ORTHO05D011318 3.7e-13 79.3 88 44.3
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 4.9e-13 79.0 183 32.2
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.9e-13 79.0 88 44.3
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 4.9e-13 79.0 88 44.3
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 6.3e-13 78.6 105 44.8
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 6.3e-13 78.6 99 39.4
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 6.3e-13 78.6 166 34.9
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 8.3e-13 78.2 99 39.4
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.1e-12 77.8 98 42.9
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 1.1e-12 77.8 113 41.6
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.4e-12 77.4 118 36.4
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.4e-12 77.4 116 36.2
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 1.8e-12 77.0 160 33.1
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.8e-12 77.0 165 33.3
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 2.4e-12 76.6 89 43.8
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 2.4e-12 76.6 88 43.2
Medtr2g094980 Medicago truncatula HOM05D001944 ORTHO05D011318 2.4e-12 76.6 88 44.3
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 2.4e-12 76.6 112 42.9
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 3.1e-12 76.3 87 43.7
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 3.1e-12 76.3 89 42.7
FAN25G3826 Fragaria x ananassa HOM05D001944 ORTHO05D002405 3.1e-12 76.3 177 33.3
Atru.chr8.1406 Acer truncatum HOM05D001944 ORTHO05D002405 4.1e-12 75.9 100 43.0
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 4.1e-12 75.9 182 31.9
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 7.0e-12 75.1 182 31.9
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 9.2e-12 74.7 88 43.2
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 9.2e-12 74.7 99 38.4
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 1.6e-11 73.9 87 46.0
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 2.0e-11 73.6 94 45.7
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 2.0e-11 73.6 88 43.2
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 2.0e-11 73.6 86 47.7
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 2.7e-11 73.2 82 46.3
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 2.7e-11 73.2 88 47.7
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 3.5e-11 72.8 140 33.6
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 3.5e-11 72.8 133 35.3
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 4.5e-11 72.4 88 40.9
Sp1g06700 Schrenkiella parvula HOM05D001944 ORTHO05D002405 5.9e-11 72.0 87 44.8
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 1.0e-10 71.2 152 32.9
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 1.0e-10 71.2 88 46.6
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 1.0e-10 71.2 92 42.4
BcaC07g42507 Brassica carinata HOM05D001944 ORTHO05D002405 1.7e-10 70.5 94 39.4
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 1.7e-10 70.5 87 41.4
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 1.7e-10 70.5 88 42.0
A09p66040 Brassica napus HOM05D001944 ORTHO05D002405 2.3e-10 70.1 122 36.1
BraA09t41943Z Brassica rapa HOM05D001944 ORTHO05D002405 2.3e-10 70.1 122 36.1
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.3e-10 70.1 88 42.0
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 2.9e-10 69.7 220 26.4
TPR.G9836 Trifolium pratense HOM05D001944 ORTHO05D011318 2.9e-10 69.7 88 42.0
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 3.8e-10 69.3 88 40.9
Aa31LG9G1980 Aethionema arabicum HOM05D001944 ORTHO05D002405 5.0e-10 68.9 88 42.0
Hma1.2p1_0058F.1_g032350 Hydrangea macrophylla HOM05D001944 ORTHO05D011318 5.0e-10 68.9 113 35.4
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 8.6e-10 68.2 82 43.9
C08p50200 Brassica napus HOM05D001944 ORTHO05D002405 8.6e-10 68.2 87 40.2
BolC8t52549H Brassica oleracea HOM05D001944 ORTHO05D002405 8.6e-10 68.2 87 40.2
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 8.6e-10 68.2 82 46.3
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 8.6e-10 68.2 158 34.2
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 8.6e-10 68.2 87 37.9
AL1G18410 Arabidopsis lyrata HOM05D001944 ORTHO05D002405 1.1e-09 67.8 133 33.8
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 1.1e-09 67.8 82 43.9
AT1G08060 Arabidopsis thaliana HOM05D001944 ORTHO05D002405 1.5e-09 67.4 133 33.8
Carub.0001s0741 Capsella rubella HOM05D001944 ORTHO05D002405 1.5e-09 67.4 85 41.2
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 1.5e-09 67.4 170 31.2
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.9e-09 67.0 96 42.7
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.9e-09 67.0 88 42.0
HPP92_003460 Vanilla planifolia HOM05D001944 ORTHO05D002405 1.9e-09 67.0 113 36.3
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 2.5e-09 66.6 174 29.3
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.5e-09 66.6 96 41.7
Thhalv10006530m.g Eutrema salsugineum HOM05D001944 ORTHO05D002405 2.5e-09 66.6 87 40.2
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 3.3e-09 66.2 134 32.1
HPP92_003457 Vanilla planifolia HOM05D001944 ORTHO05D011318 3.3e-09 66.2 113 36.3
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 5.6e-09 65.5 88 40.9
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.2e-08 64.3 88 37.5
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 1.2e-08 64.3 87 39.1
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.6e-08 63.9 145 34.5
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 2.1e-08 63.5 81 42.0
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 2.8e-08 63.2 88 38.6
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 3.6e-08 62.8 98 35.7
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 6.1e-08 62.0 78 38.5
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 8.0e-08 61.6 86 38.4
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 8.0e-08 61.6 89 40.4
Lj1A201T35 Lonicera japonica HOM05D001944 ORTHO05D011318 1.0e-07 61.2 62 50.0
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 1.4e-07 60.8 67 41.8
BcaC05g24721 Brassica carinata HOM05D001944 ORTHO05D002405 4.0e-07 59.3 88 39.8
FAN07G1966 Fragaria x ananassa HOM05D001944 ORTHO05D020674 4.0e-07 59.3 98 34.7
BcaB02g06690 Brassica carinata HOM05D000550 ORTHO05D002405 5.2e-07 58.9 126 34.1
A06p05120 Brassica napus HOM05D001944 ORTHO05D002405 5.2e-07 58.9 127 33.9
BolC5t29368H Brassica oleracea HOM05D001944 ORTHO05D002405 5.2e-07 58.9 94 40.4
BraA06t23719Z Brassica rapa HOM05D001944 ORTHO05D002405 6.8e-07 58.5 133 34.6
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 6.8e-07 58.5 98 34.7
CARHR007860 Cardamine hirsuta HOM05D001944 ORTHO05D002405 8.9e-07 58.2 148 29.1
C05p06080 Brassica napus HOM05D001944 ORTHO05D002405 1.2e-06 57.8 88 38.6
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 1.2e-06 57.8 82 36.6
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 1.2e-06 57.8 89 38.2
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.0e-06 57.0 101 38.6
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 2.0e-06 57.0 89 37.1
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 2.6e-06 56.6 82 41.5
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 2.6e-06 56.6 82 34.1
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 3.4e-06 56.2 89 38.2
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 4.4e-06 55.8 101 38.6
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 9.8e-06 54.7 67 41.8
VMungo1383G2762 Vigna mungo HOM05D001944 ORTHO05D002405 9.8e-06 54.7 89 36.0


User provided reference genes

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