Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb269460 Zea mays HOM05D002629 ORTHO05D003221 9.5e-77 290.0 141 100.0
Zm00001eb023660 Zea mays HOM05D002629 ORTHO05D003221 5.1e-30 134.8 171 51.5
Zm00001eb390940 Zea mays HOM05D002629 ORTHO05D003221 1.3e-28 130.2 171 49.7
HPP92_014909 Vanilla planifolia HOM05D002629 ORTHO05D003221 9.1e-19 97.4 171 40.4
VMungo1383G0712 Vigna mungo HOM05D002629 ORTHO05D003221 3.8e-17 92.0 171 35.1
arahy.Tifrunner.gnm1.ann1.NJU9W5 Arachis hypogaea HOM05D002629 ORTHO05D003221 1.1e-16 90.5 171 35.7
arahy.Tifrunner.gnm1.ann1.Z4V8RQ Arachis hypogaea HOM05D002629 ORTHO05D003221 1.1e-16 90.5 171 35.7
Phvul.008G045600 Phaseolus vulgaris HOM05D002629 ORTHO05D003221 1.4e-16 90.1 171 35.7
COL.COLO4_12423 Corchorus olitorius HOM05D002629 ORTHO05D003221 5.5e-16 88.2 171 34.5
Glyma.09G242200 Glycine max HOM05D002629 ORTHO05D003221 7.2e-16 87.8 171 35.1
Lj1g0021466 Lotus japonicus HOM05D002629 ORTHO05D003221 7.2e-16 87.8 170 35.3
TPR.G12223 Trifolium pratense HOM05D002629 ORTHO05D003221 1.2e-15 87.0 171 32.7
Lalb_Chr03g0040291 Lupinus albus HOM05D002629 ORTHO05D003221 3.6e-15 85.5 171 33.9
TWI59G0861 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 3.6e-15 85.5 177 34.5
Glyma.18G253400 Glycine max HOM05D002629 ORTHO05D003221 4.7e-15 85.1 171 33.9
Psat3g195880 Pisum sativum HOM05D002629 ORTHO05D003221 4.7e-15 85.1 171 31.6
MSTRG.4927 Avicennia marina HOM05D002629 ORTHO05D003221 1.0e-14 84.0 171 36.3
Lalb_Chr19g0126581 Lupinus albus HOM05D002629 ORTHO05D003221 1.0e-14 84.0 171 33.9
TWI14G1152 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 1.0e-14 84.0 176 34.1
Gohir.A08G059100 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.4e-14 83.6 171 34.5
PGR004G2363 Punica granatum HOM05D002629 ORTHO05D003221 1.4e-14 83.6 171 33.9
Aa31LG1G26430 Aethionema arabicum HOM05D002629 ORTHO05D003221 1.8e-14 83.2 171 33.9
PSO782G2159 Papaver somniferum HOM05D002629 ORTHO05D003221 1.8e-14 83.2 171 34.5
Pp3c4_17860 Physcomitrium patens HOM05D002629 ORTHO05D003221 1.8e-14 83.2 171 37.4
THA.LOC104802491 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 1.8e-14 83.2 171 33.3
TWI14G0886 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 1.8e-14 83.2 176 33.0
Atru.chr5.154 Acer truncatum HOM05D002629 ORTHO05D003221 2.3e-14 82.8 176 33.0
Lj7A544G39 Lonicera japonica HOM05D002629 ORTHO05D003221 2.3e-14 82.8 171 35.1
Nn1g00881 Nelumbo nucifera HOM05D002629 ORTHO05D003221 2.3e-14 82.8 171 34.5
PSO063G0076 Papaver somniferum HOM05D002629 ORTHO05D003221 2.3e-14 82.8 171 33.9
Gorai.004G071500 Gossypium raimondii HOM05D002629 ORTHO05D003221 3.0e-14 82.4 171 33.9
Thecc.01G393100 Theobroma cacao HOM05D002629 ORTHO05D003221 3.0e-14 82.4 171 34.5
CiPaw.13G027700 Carya illinoinensis HOM05D002629 ORTHO05D003221 3.9e-14 82.0 171 35.1
Eucgr.D01517 Eucalyptus grandis HOM05D002629 ORTHO05D003221 3.9e-14 82.0 176 34.1
Nn6g33838 Nelumbo nucifera HOM05D002629 ORTHO05D003221 3.9e-14 82.0 171 34.5
Duzib133G0660 Durio zibethinus HOM05D002629 ORTHO05D003221 5.2e-14 81.6 171 33.9
Hund27403 Selenicereus undatus HOM05D002629 ORTHO05D003221 5.2e-14 81.6 171 35.1
Ciclev10018755m.g Citrus clementina HOM05D002629 ORTHO05D003221 6.7e-14 81.3 171 32.7
Thhalv10001300m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 6.7e-14 81.3 171 32.2
Gohir.A08G029600 Gossypium hirsutum HOM05D002629 ORTHO05D003221 6.7e-14 81.3 171 34.5
Gohir.D08G040400 Gossypium hirsutum HOM05D002629 ORTHO05D003221 6.7e-14 81.3 171 33.3
Gorai.004G039300 Gossypium raimondii HOM05D002629 ORTHO05D003221 6.7e-14 81.3 171 33.3
CANSAT81G0002 Cannabis sativa HOM05D002629 ORTHO05D003221 8.8e-14 80.9 171 34.5
Ca_04037_v3 Cicer arietinum L. HOM05D002629 ORTHO05D003221 8.8e-14 80.9 171 32.2
Mapoly0150s0009 Marchantia polymorpha HOM05D002629 ORTHO05D003221 8.8e-14 80.9 171 36.3
TPR.G32620 Trifolium pratense HOM05D002629 ORTHO05D003221 8.8e-14 80.9 171 32.7
Duzib138G1927 Durio zibethinus HOM05D002629 ORTHO05D003221 1.1e-13 80.5 171 34.5
CSS0031736 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 1.5e-13 80.1 171 34.5
Gohir.D08G068300 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.5e-13 80.1 171 33.3
TAR374G0587 Trochodendron aralioides HOM05D002629 ORTHO05D003221 1.5e-13 80.1 171 35.1
Carub.0004s2749 Capsella rubella HOM05D002629 ORTHO05D003221 2.0e-13 79.7 171 31.0
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 2.0e-13 79.7 171 34.5
GSVIVG01013967001 Vitis vinifera HOM05D002629 ORTHO05D003221 2.0e-13 79.7 176 31.8
Peaxi162Scf00030g00518 Petunia axillaris HOM05D002629 ORTHO05D003221 2.6e-13 79.3 176 34.7
Prupe.2G127900 Prunus persica HOM05D002629 ORTHO05D003221 2.6e-13 79.3 171 34.5
QL04p030868 Quercus lobata HOM05D002629 ORTHO05D003221 2.6e-13 79.3 171 34.5
A04p01670 Brassica napus HOM05D002629 ORTHO05D003221 3.3e-13 79.0 125 38.4
HanXRQChr13g0423391 Helianthus annuus HOM05D002629 ORTHO05D003221 3.3e-13 79.0 170 31.2
Lsat_1_v5_gn_3_131781 Lactuca sativa HOM05D002629 ORTHO05D003221 3.3e-13 79.0 176 30.1
Manes.05G053400 Manihot esculenta HOM05D002629 ORTHO05D003221 3.3e-13 79.0 171 35.1
RcHm_v2.0_Chr1g0347431 Rosa chinensis HOM05D002629 ORTHO05D003221 3.3e-13 79.0 171 34.5
Aqoxy3G02758 Aquilegia oxysepala HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
BraA04t15891Z Brassica rapa HOM05D002629 ORTHO05D003221 4.4e-13 78.6 125 38.4
Cpa.g.sc101.21 Carica papaya HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 31.0
FvH4_7g09880 Fragaria vesca HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
FAN01G1804 Fragaria x ananassa HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
FAN06G0846 Fragaria x ananassa HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
FAN06G1336 Fragaria x ananassa HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
FAN06G2173 Fragaria x ananassa HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 33.9
Medtr7g007780 Medicago truncatula HOM05D002629 ORTHO05D003221 4.4e-13 78.6 171 28.1
Actinidia12648 Actinidia chinensis HOM05D002629 ORTHO05D003221 5.7e-13 78.2 171 33.9
CiPaw.14G021300 Carya illinoinensis HOM05D002629 ORTHO05D003221 5.7e-13 78.2 171 35.1
FAN03G1771 Fragaria x ananassa HOM05D002629 ORTHO05D003221 5.7e-13 78.2 171 33.3
FAN10G1673 Fragaria x ananassa HOM05D002629 ORTHO05D003221 5.7e-13 78.2 171 33.9
FAN10G1881 Fragaria x ananassa HOM05D002629 ORTHO05D003221 5.7e-13 78.2 171 34.5
CDE04G1105 Ceratophyllum demersum HOM05D002629 ORTHO05D003221 7.4e-13 77.8 172 31.4
AUR62023421 Chenopodium quinoa HOM05D002629 ORTHO05D003221 7.4e-13 77.8 171 33.3
Dinv43631 Davidia involucrata HOM05D002629 ORTHO05D003221 7.4e-13 77.8 176 33.0
Rhsim01G0138900 Rhododendron simsii HOM05D002629 ORTHO05D003221 7.4e-13 77.8 171 33.9
Sopen01g036210 Solanum pennellii HOM05D002629 ORTHO05D003221 7.4e-13 77.8 176 33.0
Cc02_g24970 Coffea canephora HOM05D002629 ORTHO05D003221 9.7e-13 77.4 171 35.1
Cc10_g11810 Coffea canephora HOM05D002629 ORTHO05D003221 9.7e-13 77.4 171 35.1
MD07G1104300 Malus domestica HOM05D002629 ORTHO05D003221 9.7e-13 77.4 171 32.7
Sc02g0003040 Simmondsia chinensis HOM05D002629 ORTHO05D003221 9.7e-13 77.4 176 31.8
TAR375G0449 Trochodendron aralioides HOM05D002629 ORTHO05D003221 9.7e-13 77.4 171 35.1
vmacro21053 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 9.7e-13 77.4 171 33.9
AT2G44900 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 1.3e-12 77.0 171 31.6
BcaC02g10150 Brassica carinata HOM05D002629 ORTHO05D003221 1.3e-12 77.0 125 37.6
C04p32220 Brassica napus HOM05D002629 ORTHO05D003221 1.3e-12 77.0 125 37.6
BolC4t24773H Brassica oleracea HOM05D002629 ORTHO05D003221 1.3e-12 77.0 125 37.6
AagrBONN_evm.TU.Sc2ySwM_117.2598 Anthoceros agrestis HOM05D002629 ORTHO05D003221 1.7e-12 76.6 172 34.3
CAN.G362.8 Capsicum annuum HOM05D002629 ORTHO05D003221 1.7e-12 76.6 176 31.2
Manes.01G272500 Manihot esculenta HOM05D002629 ORTHO05D003221 1.7e-12 76.6 171 32.7
ECA240G2280 Erigeron canadensis HOM05D002629 ORTHO05D003221 2.2e-12 76.3 175 30.3
Sed0006090 Sechium edule HOM05D002629 ORTHO05D003221 2.2e-12 76.3 176 31.8
AUR62013732 Chenopodium quinoa HOM05D002629 ORTHO05D003221 3.7e-12 75.5 171 32.7
DCAR_029753 Daucus carota HOM05D002629 ORTHO05D003221 4.8e-12 75.1 171 34.5
Dinv44071 Davidia involucrata HOM05D002629 ORTHO05D003221 6.3e-12 74.7 171 33.3
Nitab4.5_0003553g0050 Nicotiana tabacum HOM05D002629 ORTHO05D003221 6.3e-12 74.7 176 33.5
Nitab4.5_0003696g0020 Nicotiana tabacum HOM05D002629 ORTHO05D003221 6.3e-12 74.7 176 33.5
Thhalv10005776m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 8.2e-12 74.3 171 31.0
Sabra02G0106100 Salix brachista HOM05D002629 ORTHO05D003221 8.2e-12 74.3 171 32.2
SMO143G0319 Selaginella moellendorffii HOM05D002629 ORTHO05D003221 8.2e-12 74.3 176 31.8
Actinidia12151 Actinidia chinensis HOM05D002629 ORTHO05D003221 1.1e-11 73.9 171 32.7
Aa31LG10G14470 Aethionema arabicum HOM05D002629 ORTHO05D003221 1.1e-11 73.9 171 29.8
Pp3c12_9670 Physcomitrium patens HOM05D002629 ORTHO05D003221 1.1e-11 73.9 173 33.5
Pp3c12_9730 Physcomitrium patens HOM05D002629 ORTHO05D003221 1.1e-11 73.9 173 33.5
Potri.014G046000 Populus trichocarpa HOM05D002629 ORTHO05D003221 1.1e-11 73.9 171 33.9
MSTRG.20699 Avicennia marina HOM05D002629 ORTHO05D003221 1.4e-11 73.6 171 33.3
Oeu063227.1 Olea europaea HOM05D002629 ORTHO05D003221 1.4e-11 73.6 171 33.3
Potri.002G137100 Populus trichocarpa HOM05D002629 ORTHO05D003221 1.4e-11 73.6 171 31.6
MD02G1216100 Malus domestica HOM05D002629 ORTHO05D003221 1.8e-11 73.2 171 31.0
Sabra14G0033500 Salix brachista HOM05D002629 ORTHO05D003221 1.8e-11 73.2 171 33.3
SalBow5G1432 Salvia bowleyana HOM05D002629 ORTHO05D003221 2.4e-11 72.8 171 30.4
BcaB06g29404 Brassica carinata HOM05D002629 ORTHO05D003221 3.1e-11 72.4 171 31.6
SEGI_03510 Sequoiadendron giganteum HOM05D002629 ORTHO05D003221 3.1e-11 72.4 176 30.7
SGA_v2.0_scaffold153G36913 Striga asiatica HOM05D002629 ORTHO05D003221 3.1e-11 72.4 171 30.4
Oeu031409.1 Olea europaea HOM05D002629 ORTHO05D003221 4.1e-11 72.0 153 32.0
ATR0057G096 Amborella trichopoda HOM05D002629 ORTHO05D003221 7.0e-11 71.2 176 31.8
SGA_v2.0_scaffold52G19217 Striga asiatica HOM05D002629 ORTHO05D003221 7.0e-11 71.2 171 29.8
unitig_26.g8870 Utricularia gibba HOM05D002629 ORTHO05D003221 9.1e-11 70.9 171 31.6
EL10Ac1g00777 Beta vulgaris HOM05D002629 ORTHO05D003221 1.2e-10 70.5 171 32.2
CARHR140140 Cardamine hirsuta HOM05D002629 ORTHO05D003221 1.2e-10 70.5 171 29.8
AL4G43990 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 1.6e-10 70.1 171 29.8
CSS0010116 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 1.6e-10 70.1 171 31.6
Duzib068G1177 Durio zibethinus HOM05D002629 ORTHO05D003221 2.0e-10 69.7 171 30.4
Sp4g26970 Schrenkiella parvula HOM05D002629 ORTHO05D003221 2.0e-10 69.7 171 30.4
Manes.14G038600 Manihot esculenta HOM05D002629 ORTHO05D003221 3.5e-10 68.9 171 29.2
Gohir.A03G059800 Gossypium hirsutum HOM05D002629 ORTHO05D003221 4.5e-10 68.6 128 35.9
Actinidia40386 Actinidia chinensis HOM05D002629 ORTHO05D003221 5.9e-10 68.2 170 31.2
Migut.B01547 Erythranthe guttata HOM05D002629 ORTHO05D003221 5.9e-10 68.2 128 38.3
SEGI_39260 Sequoiadendron giganteum HOM05D002629 ORTHO05D003221 5.9e-10 68.2 176 29.0
Oeu024170.1 Olea europaea HOM05D002629 ORTHO05D003221 7.7e-10 67.8 128 37.5
Rhsim07G0034900 Rhododendron simsii HOM05D002629 ORTHO05D003221 7.7e-10 67.8 173 31.2
Gohir.D11G042900 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.0e-09 67.4 171 30.4
BcaC07g40428 Brassica carinata HOM05D002629 ORTHO05D003221 1.3e-09 67.0 150 31.3
SpUN0080_0050 Schrenkiella parvula HOM05D002629 ORTHO05D003221 1.3e-09 67.0 171 29.8
Oeu011233.1 Olea europaea HOM05D002629 ORTHO05D003221 1.7e-09 66.6 128 35.9
THA.LOC104817192 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 1.7e-09 66.6 125 34.4
Migut.O00537 Erythranthe guttata HOM05D002629 ORTHO05D003221 2.2e-09 66.2 125 36.0
Migut.N01752 Erythranthe guttata HOM05D002629 ORTHO05D003221 2.9e-09 65.9 125 36.0
Gohir.A11G039600 Gossypium hirsutum HOM05D002629 ORTHO05D003221 2.9e-09 65.9 171 29.8
Gorai.007G046200 Gossypium raimondii HOM05D002629 ORTHO05D003221 2.9e-09 65.9 171 29.8
Carub.0005s2710 Capsella rubella HOM05D002629 ORTHO05D003221 3.8e-09 65.5 125 34.4
CAN.G724.20 Capsicum annuum HOM05D002629 ORTHO05D003221 3.8e-09 65.5 127 33.1
AL5G42590 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 5.0e-09 65.1 171 28.7
BcaC07g40426 Brassica carinata HOM05D002629 ORTHO05D003221 6.5e-09 64.7 125 33.6
BcaB02g08173 Brassica carinata HOM05D002629 ORTHO05D003221 8.5e-09 64.3 125 34.4
BcaC07g42772 Brassica carinata HOM05D002629 ORTHO05D003221 8.5e-09 64.3 171 29.8
Ciclev10004368m.g Citrus clementina HOM05D002629 ORTHO05D003221 8.5e-09 64.3 171 28.7
COL.COLO4_37342 Corchorus olitorius HOM05D002629 ORTHO05D003221 8.5e-09 64.3 171 30.4
AT3G60350 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 1.1e-08 63.9 171 28.7
Potri.001G079300 Populus trichocarpa HOM05D002629 ORTHO05D003221 1.5e-08 63.5 171 29.8
SalBow5G0878 Salvia bowleyana HOM05D002629 ORTHO05D003221 1.5e-08 63.5 119 35.3
Sp5g02870 Schrenkiella parvula HOM05D002629 ORTHO05D003221 1.5e-08 63.5 125 34.4
C04p71290 Brassica napus HOM05D002629 ORTHO05D003221 2.5e-08 62.8 171 29.2
CARHR170670 Cardamine hirsuta HOM05D002629 ORTHO05D003221 2.5e-08 62.8 171 29.2
SalBow5G1872 Salvia bowleyana HOM05D002629 ORTHO05D003221 2.5e-08 62.8 119 35.3
BolC4t28633H Brassica oleracea HOM05D002629 ORTHO05D003221 3.2e-08 62.4 171 29.2
A09p52630 Brassica napus HOM05D002629 ORTHO05D003221 4.2e-08 62.0 171 30.4
BraA09t40692Z Brassica rapa HOM05D002629 ORTHO05D003221 4.2e-08 62.0 171 30.4
HanXRQChr03g0093141 Helianthus annuus HOM05D002629 ORTHO05D003221 5.5e-08 61.6 176 29.0
Thecc.03G149100 Theobroma cacao HOM05D002629 ORTHO05D003221 5.5e-08 61.6 171 28.1
BcaC07g40430 Brassica carinata HOM05D002629 ORTHO05D003221 7.2e-08 61.2 153 29.4
A04p33530 Brassica napus HOM05D002629 ORTHO05D003221 7.2e-08 61.2 171 28.7
HanXRQChr03g0093221 Helianthus annuus HOM05D002629 ORTHO05D003221 7.2e-08 61.2 176 29.0
BcaC02g07120 Brassica carinata HOM05D002629 ORTHO05D003221 9.4e-08 60.8 172 29.1
Sed0010164 Sechium edule HOM05D002629 ORTHO05D003221 9.4e-08 60.8 176 26.7
vmacro13487 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 9.4e-08 60.8 171 28.1
BolC8t51129H Brassica oleracea HOM05D002629 ORTHO05D003221 1.2e-07 60.5 171 28.7
BraA04t18815Z Brassica rapa HOM05D002629 ORTHO05D003221 2.1e-07 59.7 171 28.1
ClCG05G000420 Citrullus lanatus HOM05D002629 ORTHO05D003221 2.1e-07 59.7 176 27.3
Atru.chr1.908 Acer truncatum HOM05D002629 ORTHO05D003221 2.7e-07 59.3 124 32.3
C08p35360 Brassica napus HOM05D002629 ORTHO05D003221 2.7e-07 59.3 171 28.1
Sabra01G0056800 Salix brachista HOM05D002629 ORTHO05D003221 2.7e-07 59.3 171 29.8
Aqoxy7G00845 Aquilegia oxysepala HOM05D002629 ORTHO05D003221 1.8e-06 56.6 125 34.4
BcaC07g40427 Brassica carinata HOM05D002629 ORTHO05D003221 1.8e-06 56.6 119 31.1
MELO3C005980.2 Cucumis melo HOM05D002629 ORTHO05D003221 1.8e-06 56.6 176 26.7
TPR.G40563 Trifolium pratense HOM05D002629 ORTHO05D003221 1.8e-06 56.6 173 26.6
TPR.G32631 Trifolium pratense HOM05D002629 ORTHO05D003221 3.0e-06 55.8 173 26.6
CsaV3_3G007580 Cucumis sativus L. HOM05D002629 ORTHO05D003221 6.7e-06 54.7 175 26.9
vmacro18977 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 6.7e-06 54.7 180 26.7
vmacro23013 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 6.7e-06 54.7 180 26.7


User provided reference genes

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