Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 4.5e-270 934.1 507 100.0
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 2.1e-227 792.3 507 86.8
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 4.0e-194 681.8 509 75.8
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 1.6e-113 414.1 502 52.2
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 3.5e-105 386.3 497 49.3
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 3.3e-103 379.8 500 49.2
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.6e-102 377.5 498 48.4
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 1.4e-101 374.4 509 47.9
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.4e-101 374.4 500 49.2
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 5.8e-100 369.0 496 48.8
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 9.9e-100 368.2 505 46.5
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.1e-98 364.8 497 48.5
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 3.2e-98 363.2 494 49.4
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 3.5e-97 359.8 507 47.3
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 7.9e-97 358.6 505 47.5
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 3.0e-96 356.7 499 49.7
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.5e-95 354.4 500 48.4
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 4.3e-95 352.8 499 49.3
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 9.6e-95 351.7 496 47.0
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 1.6e-94 350.9 503 46.5
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 2.8e-94 350.1 498 48.0
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 2.8e-94 350.1 496 48.4
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 6.2e-94 349.0 495 48.3
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.1e-93 348.2 525 45.5
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.0e-92 344.0 499 47.3
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.3e-91 341.3 511 45.2
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.9e-91 340.1 499 46.9
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 3.8e-91 339.7 494 47.2
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 3.8e-91 339.7 524 45.4
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.4e-90 337.0 497 46.9
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 5.5e-90 335.9 503 44.5
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 7.1e-90 335.5 499 47.1
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.6e-89 334.3 502 46.2
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 2.1e-89 334.0 503 45.7
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 2.1e-89 334.0 503 44.5
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 2.7e-89 333.6 497 45.9
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 4.6e-89 332.8 552 44.4
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 3.9e-88 329.7 509 45.2
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.9e-87 327.4 497 46.3
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 5.6e-87 325.9 504 47.6
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 9.6e-87 325.1 502 46.8
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 4.8e-86 322.8 492 45.7
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 1.2e-84 318.2 577 41.8
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 2.6e-84 317.0 469 46.7
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 5.8e-84 315.8 529 42.7
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.3e-83 314.7 513 42.9
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 8.4e-83 312.0 502 44.8
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 2.5e-82 310.5 490 44.1
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 3.5e-81 306.6 516 43.4
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.6e-81 306.2 559 41.5
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.0e-80 305.1 561 41.5
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 3.0e-80 303.5 510 42.4
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.7e-80 302.4 558 41.2
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 4.3e-79 299.7 506 43.5
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 2.8e-78 297.0 504 43.3
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 4.8e-78 296.2 503 43.5
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 4.8e-78 296.2 503 43.5
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 6.3e-78 295.8 414 48.8
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 3.1e-77 293.5 499 41.9
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 1.2e-76 291.6 495 43.4
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 3.4e-76 290.0 507 42.6
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 3.4e-76 290.0 514 42.0
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 1.0e-75 288.5 502 42.0
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 4.2e-74 283.1 495 42.4
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 9.3e-74 282.0 512 41.8
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 7.4e-71 272.3 471 42.9
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 1.0e-67 261.9 437 43.7
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 6.5e-67 259.2 504 39.5
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 1.9e-66 257.7 359 48.7
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 4.2e-66 256.5 489 40.3
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 4.6e-65 253.1 417 42.4
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 2.3e-64 250.8 422 43.1
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 1.5e-63 248.1 404 43.1
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 4.1e-61 240.0 447 40.9
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.5e-58 230.7 408 42.2
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 5.1e-56 223.0 496 36.7
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 3.1e-53 213.8 370 43.5
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 2.4e-45 187.6 256 48.4
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 7.7e-44 182.6 396 35.9
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 3.0e-32 144.1 289 37.4
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 5.2e-32 143.3 310 36.5
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 3.4e-31 140.6 222 43.7
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 8.3e-30 136.0 304 36.2
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 4.3e-26 123.6 169 46.2
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 1.6e-25 121.7 86 77.9
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 2.8e-25 120.9 561 29.4
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 7.5e-23 112.8 310 32.9
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.2e-22 111.3 86 74.4
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 1.0e-19 102.4 229 40.6
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 1.0e-19 102.4 73 75.3
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 8.6e-19 99.4 160 45.0
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 2.3e-16 91.3 53 88.7
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 4.1e-13 80.5 66 60.6
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 7.0e-13 79.7 67 59.7
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 1.7e-11 75.1 66 59.1
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 3.9e-11 73.9 44 81.8
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 2.5e-10 71.2 42 83.3
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 9.5e-10 69.3 56 71.4
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.8e-08 65.1 78 53.8
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.8e-08 65.1 78 53.8
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 1.7e-06 58.5 66 51.5


User provided reference genes

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